rs33654845 SNP Detail

Summary

• ID
  rs33654845
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:23987727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCAAGGA TGACAGCTTT
  CAGTCTCGAC AATCTCTTAA TCCTTGCCCT TACCATAGAA GCAAGGGCTC CAGTAACACC
  TCCAAGATCC ATATTGTTCT TTAATGGTGC TCTTTATTCA TAGGAGAGAT TAGAATTTTG
  TAAAGAAATG TTGGTCCCAG CAATGGGATA AGGAGCAGGG AAAGGAACAA CTGAAGCCAC
  R
  TTTGTGCAGA GGAGACAATG TCAAAGCATT TTATAAGGTC GCTGCTGACA GTGTGAATAG
  GCACCCAGTC TACAAATCTC AAATGCCAAA ATAATAATGG AGAATAAATA ATTACAAATA
  GTCAGAAAGA GGACTAAATG AGGCCATAGT AATTAAGGGT AGATCTGTAT ATAAAATAAG
  TGATGGAGGA GGAGAAAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47825035	NES11961822	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33654845					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47825035	NES11961822	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:23987727 () rs orientation: forward

Symbol	Name	Function Class
Rr214210	regulatory region 214210	127 bp distal
Rr222331	regulatory region 222331	251 bp distal
Rr384303	regulatory region 384303	1990 bp upstream