rs33654849 SNP Detail

Summary

• ID
  rs33654849
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:23987891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATAAGGA GCAGGGAAAG
  GAACAACTGA AGCCACGTTT GTGCAGAGGA GACAATGTCA AAGCATTTTA TAAGGTCGCT
  GCTGACAGTG TGAATAGGCA CCCAGTCTAC AAATCTCAAA TGCCAAAATA ATAATGGAGA
  ATAAATAATT ACAAATAGTC AGAAAGAGGA CTAAATGAGG CCATAGTAAT TAAGGGTAGA
  K
  CTGTATATAA AATAAGTGAT GGAGGAGGAG AAAGAGGAAG AAGAGGAGGG AGAGAGAGGA
  GCAGGAGATG ATTGACAGCT AGTCTAGCAA AATAAAGCTG GGGGGGGGCT TGGTAATAGA
  TATGACATCT GTCTCTAAAA ACAAATTTTT GAAATAGTTT AGTCAATACA ACAGAAATAT
  TTTCTCTAAA TAGAAGTGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47825039	NES11961826	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33654849					SNP	T	T	T	T	T	T	G	T	T	T	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47825039	NES11961826	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:23987891 () rs orientation: forward

Symbol	Name	Function Class
Rr214210	regulatory region 214210	291 bp distal
Rr222331	regulatory region 222331	415 bp distal
Rr384303	regulatory region 384303	1826 bp upstream