rs33654851 SNP Detail

Summary

• ID
  rs33654851
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:23988275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTAAATAG AAGTGATTTG
  CAGGAAGAGA ACAGAATAGT CATACAATAT CCCTGTGACA ATATCTAATT AAAAAAATGG
  CCTTATTTCT TTTTGTAGTT CTCGGTGTAT AGTCATGGCT GAAGTGCTCT AAATGCTAAT
  CTAAAATTTT AATTTTAAAA TTGAGCCACC TAGAAAGTAC ATTTTTAGCT GTCAAGAATG
  R
  TGGAGAATAT TTTCCATGCA CAGTGCACAC AACGGCACAT TGTACCCACA CACAGCCAAC
  TTTTTTCTGC CATAGAACAC AGCAATGAGT ATGAACTGTG TGACAGTGTG GTGACATAGT
  TTCAGAAAAC ACCCCTTCTT GCTTGCAGAG ACTGAACATT TTCCATGCTT TGTAAAGGAG
  TTAATAATAT GTGTAACTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47825041	NES11961828	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33654851					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47825041	NES11961828	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:23988275 () rs orientation: forward

Symbol	Name	Function Class
Rr214210	regulatory region 214210	675 bp distal
Rr222331	regulatory region 222331	799 bp distal
Rr384303	regulatory region 384303	1442 bp upstream