rs33654853 SNP Detail

Summary

• ID
  rs33654853
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:23988490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCACAGT GCACACAACG
  GCACATTGTA CCCACACACA GCCAACTTTT TTCTGCCATA GAACACAGCA ATGAGTATGA
  ACTGTGTGAC AGTGTGGTGA CATAGTTTCA GAAAACACCC CTTCTTGCTT GCAGAGACTG
  AACATTTTCC ATGCTTTGTA AAGGAGTTAA TAATATGTGT AACTTTAATT TTTCCAATGC
  Y
  TATTTTTTTC TTTTTTCTTT TATTGGTTAT CTTATTTAGT TACATTTCAA ATGTTATTCC
  CCCTTCCCAG TGTCTCCTCC ACAAACCCCC TATCTCATTG CCCAACCCAG CCAGCCCCTC
  CTGTCTCACC ACCTTAGCAT TTCCCTATGC TGGGGCATCA AGCCTCCACA GGACCAAGGG
  CCTCCCTGTC CATTGATGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47825043	NES11961830	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33654853					SNP	T	T	T	T	T	T	C	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47825043	NES11961830	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:23988490 () rs orientation: forward

Symbol	Name	Function Class
Rr214210	regulatory region 214210	890 bp distal
Rr222331	regulatory region 222331	1014 bp distal
Rr384303	regulatory region 384303	1227 bp upstream