rs33656359 SNP Detail

Summary

• ID
  rs33656359
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56259276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCT GTTGATGCTG AAGGGACACA
  W
  GTGACCTGGA GTTCCCAGAG ACTTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss39562948	mCV22807306	ABI	CRAMUS_MOUSE	f	SNP		T	A					A
ss62801963	NES17366718	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	T	A	A	T	T	T	A	T
ss145806855	ENSMUSSNP6827869	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33656359					SNP	T	T	A	A	A	T	A	A	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62801963	NES17366718	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56259276 () rs orientation: forward

Symbol	Name	Function Class
Ebi3	Epstein-Barr virus induced gene 3	364 bp upstream
Rr340009	regulatory region 340009	524 bp proximal
Rr342199	regulatory region 342199	1076 bp distal
Tssr145247	transcription start site region 145247	352 bp upstream
Tssr145248	transcription start site region 145248	440 bp upstream
Tssr145249	transcription start site region 145249	452 bp upstream
Tssr145250	transcription start site region 145250	468 bp upstream
Tssr145251	transcription start site region 145251	503 bp upstream
Tssr145252	transcription start site region 145252	515 bp upstream
Tssr145253	transcription start site region 145253	522 bp upstream
Tssr145254	transcription start site region 145254	545 bp upstream
Tssr145255	transcription start site region 145255	575 bp upstream
Tssr145256	transcription start site region 145256	1618 bp upstream