rs33657892 SNP Detail

Summary

• ID
  rs33657892
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:154031052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCAATGTTA GTGAAGGAAT GGGCTGACAG AATTCTTATA
  TACTACAAGT GAAAACACAG GGTGGAACAA CCACTTCAGA AAAGGTTCTG GAAGTTTCTT
  W
  TAAAGCTAAT ACACACTGAG CCCTGTGACC CAGCAATTTC ATCCCAGGAG AAATGAAACG
  TGTTCACAAA TTGATGATGT GCATAGAACA TTTATAGAA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45305345	mCV23867901	ABI	CRAMUS_MOUSE	f	SNP	T	A	T
ss148023833	ENSMUSSNP4403166	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss320569676	CHEV_2_154014868	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33657892					SNP	T	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154031052 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	1686 bp upstream
Rr567773	regulatory region 567773	1335 bp distal
Rr567774	regulatory region 567774	1196 bp proximal
Rr567775	regulatory region 567775	1697 bp proximal
Rr567776	regulatory region 567776	1923 bp proximal
Tssr20971	transcription start site region 20971	1617 bp upstream
Tssr20972	transcription start site region 20972	1631 bp upstream
Tssr20973	transcription start site region 20973	1644 bp upstream
Tssr20974	transcription start site region 20974	1674 bp upstream
Tssr20975	transcription start site region 20975	1701 bp upstream