rs33658818 SNP Detail

Summary

• ID
  rs33658818
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113877018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTCCCAT GGTGTGACAT
  AATGCTGCAT GTGAAATACA CGCATGTACT CAAAACCAGT GTTGCAGTGA AGTCATGTGA
  TACAACACAG GCAATAACCA TCGCAAACAC CTTGTATTAA TTTTACATTT GATTTGGAAT
  TCAATTTTGG TCATAGTGAA TTCATGAGCC ATATAATGTT TTTTGTTTTG TTTTGTTTAA
  W
  AAAAAAAACT GATGGTTACC AGTATATATG CGGTATGACA AGTCAACACC TGGCAAGTCA
  ACCTTCTCAT TGCTTTCATT GGCTTCGAGT CACACTACAG GCTGGAGAGC TGTCTCAGTG
  GCTAATATCC TTAATATCCC TATAGATGAA CCTGGTTTGA TTCCTAGCAC CTATATGGTG
  GCTCAAAACC ATCCAGTTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45305724	mCV22515906	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33658818					SNP	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113877018 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	745 bp downstream
Rr562815	regulatory region 562815	827 bp distal
Rr562816	regulatory region 562816	within coordinates
Tssr600	transcription start site region 600	1025 bp downstream
Tssr601	transcription start site region 601	1035 bp downstream
Tssr19429	transcription start site region 19429	747 bp upstream
Tssr19430	transcription start site region 19430	842 bp upstream
Tssr19431	transcription start site region 19431	922 bp upstream
Tssr19432	transcription start site region 19432	1018 bp upstream
Tssr19433	transcription start site region 19433	1584 bp upstream
Tssr19434	transcription start site region 19434	1637 bp upstream
Tssr25660	transcription start site region 25660	774 bp downstream
Tssr25661	transcription start site region 25661	791 bp downstream
Tssr25662	transcription start site region 25662	848 bp downstream
Tssr25663	transcription start site region 25663	911 bp downstream
Tssr25664	transcription start site region 25664	941 bp downstream
Tssr25665	transcription start site region 25665	1049 bp downstream
Tssr25666	transcription start site region 25666	1616 bp downstream
Tssr25667	transcription start site region 25667	1643 bp downstream
Tssr25668	transcription start site region 25668	1679 bp downstream
Tssr25669	transcription start site region 25669	1708 bp downstream