rs33658918 SNP Detail

Summary

• ID
  rs33658918
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:110975330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGG CCTCTAGTTA CTTCAGGTGA
  Y
  ATCTGAGACA GGAGAAGAAA GAGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46302643	mCV23786963	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss136962435	ENSMUSSNP931287	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			T
ss323195917	CHEV_9_111048766	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33658918					SNP	C	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110975330 () rs orientation: forward

Symbol	Name	Function Class
Lrrfip2	leucine rich repeat (in FLII) interacting protein 2	Intron
Rr687307	regulatory region 687307	1223 bp distal
Tssr87483	transcription start site region 87483	433 bp upstream
Tssr87484	transcription start site region 87484	1771 bp upstream