rs33659139 SNP Detail

Summary

• ID
  rs33659139
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124045208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCC CTTCCCCCGG GCTCCACGCA
  K
  GGGCGCATGC TCCTCCCTTT TTGGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45805648	mCV24597059	ABI	CRAMUS_MOUSE	f	SNP	G	T	T
ss321672044	CHEV_5_124357154	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33659139					SNP	G	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124045208 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16594	CpG island 16594	within coordinates
Denr	density-regulated protein	101 bp upstream
Rr124363	regulatory region 124363	within coordinates
Rr399353	regulatory region 399353	within coordinates
Tssr48807	transcription start site region 48807	41 bp upstream
Tssr48808	transcription start site region 48808	54 bp upstream
Tssr48809	transcription start site region 48809	94 bp upstream
Tssr48810	transcription start site region 48810	149 bp upstream
Tssr48811	transcription start site region 48811	231 bp upstream
Tssr48812	transcription start site region 48812	377 bp upstream
Tssr48813	transcription start site region 48813	417 bp upstream
Tssr48814	transcription start site region 48814	427 bp upstream
Tssr48815	transcription start site region 48815	451 bp upstream
Tssr48816	transcription start site region 48816	477 bp upstream
Tssr48817	transcription start site region 48817	937 bp upstream
Tssr48818	transcription start site region 48818	1033 bp upstream
Tssr48819	transcription start site region 48819	1945 bp upstream
Tssr48820	transcription start site region 48820	1979 bp upstream