rs33659955 SNP Detail

Summary

• ID
  rs33659955
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110485494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCC AGATCAAGGG GCGTGGACTT
  Y
  TGTATCAACT CAGCATTGAT TGGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46302554	mCV25039921	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss136958700	ENSMUSSNP5803488	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss323193703	CHEV_9_110558930	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33659955					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110485494 () rs orientation: forward

Symbol	Name	Function Class
Ccdc12	coiled-coil domain containing 12	77 bp upstream
Cpgi22385	CpG island 22385	1986 bp distal
Cpgi22386	CpG island 22386	within coordinates
Gm42470	predicted gene 42470	within coordinates
Gm69744	predicted gene, 69744	within coordinates
Rr401702	regulatory region 401702	within coordinates
Tssr87398	transcription start site region 87398	40 bp upstream
Tssr87399	transcription start site region 87399	68 bp upstream
Tssr91646	transcription start site region 91646	7 bp upstream