rs33660406 SNP Detail

Summary

• ID
  rs33660406
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:103603072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAA TTTCATATGT AGTATAAGAG
  Y
  ATGACTTTAT TCTCTTACAG ATGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss46303212	mCV24337871	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss136881982	ENSMUSSNP1031209	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss323161884	CHEV_9_103628203	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33660406					SNP	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:103603072 () rs orientation: forward

Symbol	Name	Function Class
Gm46129	predicted gene, 46129	16 bp downstream
Rr192253	regulatory region 192253	1672 bp distal
Rr192254	regulatory region 192254	72 bp distal
Rr198542	regulatory region 198542	129 bp proximal
Tmem108	transmembrane protein 108	within coordinates