rs33660686 SNP Detail

Summary

• ID
  rs33660686
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:113620847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTG GCATGGAGTA ACACTGTGTT
  Y
  TTGGCTTGAC TGTTCAGAGA AAGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46302282	mCV23322798	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss136989713	ENSMUSSNP4190816	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss323201092	CHEV_9_113700897	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33660686					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:113620847 () rs orientation: forward

Symbol	Name	Function Class
Clasp2	CLIP associating protein 2	within coordinates
Rr198874	regulatory region 198874	1847 bp distal
Rr205836	regulatory region 205836	553 bp proximal
Tssr3045	transcription start site region 3045	1515 bp upstream
Tssr87530	transcription start site region 87530	956 bp upstream
Tssr87531	transcription start site region 87531	1052 bp upstream
Tssr87532	transcription start site region 87532	1202 bp upstream
Tssr87533	transcription start site region 87533	1249 bp upstream
Tssr87534	transcription start site region 87534	1537 bp upstream
Tssr87535	transcription start site region 87535	1568 bp upstream