rs33660804 SNP Detail

Summary

• ID
  rs33660804
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30305664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCGG AGACGGACCT CTAGCTCAGC
  Y
  GTTAGCAGCC CGGCGCTGGG CTCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45305815	mCV23383237	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss320221003	CHEV_2_30271172	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33660804					SNP	T	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30305664 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11436	CpG island 11436	within coordinates
Crat	carnitine acetyltransferase	62 bp upstream
Gm16323	predicted gene 16323	314 bp downstream
Ptpa	protein phosphatase 2 protein activator	398 bp upstream
Tssr17115	transcription start site region 17115	within coordinates
Tssr17116	transcription start site region 17116	379 bp upstream
Tssr17117	transcription start site region 17117	428 bp upstream
Tssr17118	transcription start site region 17118	444 bp upstream
Tssr17119	transcription start site region 17119	535 bp upstream
Tssr23369	transcription start site region 23369	1534 bp upstream
Tssr23370	transcription start site region 23370	1472 bp upstream
Tssr23371	transcription start site region 23371	284 bp upstream
Tssr23372	transcription start site region 23372	242 bp upstream
Tssr23373	transcription start site region 23373	223 bp upstream
Tssr23374	transcription start site region 23374	203 bp upstream
Tssr23375	transcription start site region 23375	147 bp upstream
Tssr23376	transcription start site region 23376	92 bp upstream
Tssr23377	transcription start site region 23377	40 bp upstream
Tssr23378	transcription start site region 23378	28 bp upstream
Tssr23379	transcription start site region 23379	within coordinates
Tssr23380	transcription start site region 23380	115 bp downstream
Tssr23381	transcription start site region 23381	351 bp downstream