rs33661999 SNP Detail

Summary

• ID
  rs33661999
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173055711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGAAAGAAAA AGAGAGAAAG GAAGAAAGGA AGAAAGAAAG AGAAAGAGAA AACTAACAAA
  ATTTCTAACC ATGTTTCTGT AACAATGAGC ATACTTGGGA TGAAACAGTT TAGAGATGCA
  TTCTTTAATT GTTCATTTAT TTTACTGGCT TTAAAAGATA TTTTTCCAGG TGTAGTGGTG
  CTTTAATCCC AGAATTTAAT AGGCAGAAGC AAGAAGATCT CTGTGGGTTC AAGACCAGCT
  TGGTCTACAT GGTGAGTTCT AGGACATCCA GGGCTACATG GCAAGACTGT TTCAAAAAAA
  M
  AAAAAAAAAA AAAAAAAAAA AAAAAAAGAA AAAATACATT TAAAAAAGAA CATGGGGGGG
  GGGGTGTTTC CTGAGAGCAC CAGGGCTCAG AGCTGATACT GCTACCCCCA CAGATCTCGG
  CATCTTCAGG CTTCTATACA AGTCTAGCCC AGCCCTCTCC TTAAACAATC TTATTTACTT
  GTTTTCAATT TGGGTTTTGT GGTTTAGGAT AGCTTTGAAC TCGAAGTTCT TCTCCCTCTG
  CCTCCCAAAG GCTGGGATAA GAGCCCGGCA CTGTCCTGTC TTGCCTGCCT TCTTCAAGTG
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45305936	mCV22954100	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33661999					SNP	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173055711 () rs orientation: forward

Symbol	Name	Function Class
Tssr22048	transcription start site region 22048	1787 bp upstream
Tssr27969	transcription start site region 27969	103 bp upstream
Tssr27970	transcription start site region 27970	within coordinates
Tssr27971	transcription start site region 27971	1846 bp downstream
Tssr27972	transcription start site region 27972	1889 bp downstream
Zbp1	Z-DNA binding protein 1	within coordinates