rs33662140 SNP Detail

Summary

• ID
  rs33662140
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:151353338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTATCATT CTAGTGAGCA
  CCTAGGGGTA GATGAAAGAC AGAGACAGGC AAAACTGGAA TATAATAGTT GAACAAGGAG
  ACCTGAATTC AAGTGCCAGT TCTGGTTGTA CAATCAACAT TCAGTCTAGG AATGTCTTAA
  GGTCTCTCCA GGTTGATTTC TCTTTCTGTT TCTAAGAATG AAGAAGTGAG GCTTATTTAA
  K
  GATGTAAAAT TAGATGCTTT CAGAAGTTTC GGGTGTAACT CACTAGGAGG TAGGTGCTCA
  GGGGAGCCTA GAGGCCACAT GATCCACATA TTTTATAAGG AGACAAGAAT TGAGATTTTT
  CTGCAAAATT TTATATGTGA GCAGCTTACT TGAAATATTT AAAAGAAAAC ACCACCAATG
  CCAAATAAAC TATGTTTACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss45806293	mCV23844884	ABI	CRAMUS_MOUSE	f	SNP	G	T	T	T
ss144728585	ENSMUSSNP399428	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs33662140					SNP	G	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:151353338 () rs orientation: forward

Symbol	Name	Function Class
D730045B01Rik	RIKEN cDNA D730045B01 gene	1663 bp upstream
Gm3704	predicted gene 3704	within coordinates
Gm42906	predicted gene 42906	1710 bp upstream
Rr378823	regulatory region 378823	within coordinates
Tssr54686	transcription start site region 54686	1711 bp upstream
Tssr54687	transcription start site region 54687	1686 bp upstream