rs33662204 SNP Detail

Summary

• ID
  rs33662204
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149978336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGACACTGT GCCTCAAAAC ACAACAGTCG
  TATTGATGTT GTGATCTTCT TTGAGACGGT GCTTCTAAGT GATGGATGCT GTCATGTATT
  ATACAGTCAT CTGTTTGCTT GAACAAATAG GTGAATGGAT AGATACTTAC TTTAGAATTT
  W
  CATGTTCCAG GAAATAAGGA GCTTCCTGAT TCAAAAGAAG TGCTGGAAAA GGTTCTTCTA
  CGGAGAGAGT TCATCCCTGA CCCCCAAGGC TCAAATATGA TGTTTGCATT CTTTGCCCAG
  CACTTCACCC ATCAGTTTTT CAAGACAGAT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss49513611	NES12839760	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A	T	A	A	A		T	A	A		A
ss320045528	CHEV_1_151949715	CHEVERUD	SCREENING_POP	f	SNP											A				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33662204					SNP	A	A	A	A	T	A	T	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513611	NES12839760	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149978336 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	1665 bp proximal
Rr24983	regulatory region 24983	1697 bp proximal
Rr31002	regulatory region 31002	936 bp distal
Tssr242	transcription start site region 242	215 bp upstream
Tssr9223	transcription start site region 9223	1636 bp downstream
Tssr9224	transcription start site region 9224	1528 bp downstream
Tssr9225	transcription start site region 9225	1403 bp downstream
Tssr9226	transcription start site region 9226	1390 bp downstream
Tssr9227	transcription start site region 9227	1312 bp downstream
Tssr9228	transcription start site region 9228	1272 bp downstream
Tssr9229	transcription start site region 9229	1259 bp downstream
Tssr9230	transcription start site region 9230	472 bp downstream
Tssr9231	transcription start site region 9231	439 bp downstream
Tssr9232	transcription start site region 9232	396 bp downstream
Tssr9233	transcription start site region 9233	57 bp upstream
Tssr9234	transcription start site region 9234	61 bp upstream
Tssr9235	transcription start site region 9235	101 bp upstream
Tssr9236	transcription start site region 9236	138 bp upstream
Tssr9237	transcription start site region 9237	157 bp upstream
Tssr9238	transcription start site region 9238	186 bp upstream
Tssr9239	transcription start site region 9239	227 bp upstream
Tssr9240	transcription start site region 9240	249 bp upstream
Tssr9241	transcription start site region 9241	275 bp upstream
Tssr9242	transcription start site region 9242	295 bp upstream
Tssr9243	transcription start site region 9243	419 bp upstream
Tssr9244	transcription start site region 9244	464 bp upstream
Tssr9245	transcription start site region 9245	484 bp upstream
Tssr9246	transcription start site region 9246	521 bp upstream
Tssr9247	transcription start site region 9247	660 bp upstream
Tssr9248	transcription start site region 9248	1080 bp upstream
Tssr9249	transcription start site region 9249	1107 bp upstream
Tssr9250	transcription start site region 9250	1275 bp upstream
Tssr9251	transcription start site region 9251	1321 bp upstream
Tssr9252	transcription start site region 9252	1376 bp upstream
Tssr9253	transcription start site region 9253	1406 bp upstream
Tssr9254	transcription start site region 9254	1433 bp upstream
Tssr9255	transcription start site region 9255	1452 bp upstream
Tssr9256	transcription start site region 9256	1692 bp upstream
Tssr9257	transcription start site region 9257	1716 bp upstream
Tssr9258	transcription start site region 9258	1739 bp upstream
Tssr9259	transcription start site region 9259	1764 bp upstream
Tssr9260	transcription start site region 9260	1819 bp upstream
Tssr9261	transcription start site region 9261	1874 bp upstream
Tssr9262	transcription start site region 9262	1882 bp upstream
Tssr9263	transcription start site region 9263	1904 bp upstream
Tssr9264	transcription start site region 9264	1949 bp upstream
Tssr9265	transcription start site region 9265	1980 bp upstream
Tssr14130	transcription start site region 14130	1323 bp upstream
Tssr14131	transcription start site region 14131	1267 bp upstream