rs33662205 SNP Detail

Summary

• ID
  rs33662205
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149978332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTATATC TTAACACTTG
  AATTTAAAAC CTTAGCCCAG CCTGGGGTAC AAGCCTGACA CTGTGCCTCA AAACACAACA
  GTCGTATTGA TGTTGTGATC TTCTTTGAGA CGGTGCTTCT AAGTGATGGA TGCTGTCATG
  TATTATACAG TCATCTGTTT GCTTGAACAA ATAGGTGAAT GGATAGATAC TTACTTTAGA
  R
  TTTACATGTT CCAGGAAATA AGGAGCTTCC TGATTCAAAA GAAGTGCTGG AAAAGGTTCT
  TCTACGGAGA GAGTTCATCC CTGACCCCCA AGGCTCAAAT ATGATGTTTG CATTCTTTGC
  CCAGCACTTC ACCCATCAGT TTTTCAAGAC AGATCATAAG CGAGGACCTG GGTTCACCCG
  AGGACTGGGC CATGGAGTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49513612	NES12839756	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33662205					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513612	NES12839756	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149978332 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Tssr242	transcription start site region 242	219 bp upstream
Tssr9223	transcription start site region 9223	1632 bp downstream
Tssr9224	transcription start site region 9224	1524 bp downstream
Tssr9225	transcription start site region 9225	1399 bp downstream
Tssr9226	transcription start site region 9226	1386 bp downstream
Tssr9227	transcription start site region 9227	1308 bp downstream
Tssr9228	transcription start site region 9228	1268 bp downstream
Tssr9229	transcription start site region 9229	1255 bp downstream
Tssr9230	transcription start site region 9230	468 bp downstream
Tssr9231	transcription start site region 9231	435 bp downstream
Tssr9232	transcription start site region 9232	392 bp downstream
Tssr9233	transcription start site region 9233	61 bp upstream
Tssr9234	transcription start site region 9234	65 bp upstream
Tssr9235	transcription start site region 9235	105 bp upstream
Tssr9236	transcription start site region 9236	142 bp upstream
Tssr9237	transcription start site region 9237	161 bp upstream
Tssr9238	transcription start site region 9238	190 bp upstream
Tssr9239	transcription start site region 9239	231 bp upstream
Tssr9240	transcription start site region 9240	253 bp upstream
Tssr9241	transcription start site region 9241	279 bp upstream
Tssr9242	transcription start site region 9242	299 bp upstream
Tssr9243	transcription start site region 9243	423 bp upstream
Tssr9244	transcription start site region 9244	468 bp upstream
Tssr9245	transcription start site region 9245	488 bp upstream
Tssr9246	transcription start site region 9246	525 bp upstream
Tssr9247	transcription start site region 9247	664 bp upstream
Tssr9248	transcription start site region 9248	1084 bp upstream
Tssr9249	transcription start site region 9249	1111 bp upstream
Tssr9250	transcription start site region 9250	1279 bp upstream
Tssr9251	transcription start site region 9251	1325 bp upstream
Tssr9252	transcription start site region 9252	1380 bp upstream
Tssr9253	transcription start site region 9253	1410 bp upstream
Tssr9254	transcription start site region 9254	1437 bp upstream
Tssr9255	transcription start site region 9255	1456 bp upstream
Tssr9256	transcription start site region 9256	1696 bp upstream
Tssr9257	transcription start site region 9257	1720 bp upstream
Tssr9258	transcription start site region 9258	1743 bp upstream
Tssr9259	transcription start site region 9259	1768 bp upstream
Tssr9260	transcription start site region 9260	1823 bp upstream
Tssr9261	transcription start site region 9261	1878 bp upstream
Tssr9262	transcription start site region 9262	1886 bp upstream
Tssr9263	transcription start site region 9263	1908 bp upstream
Tssr9264	transcription start site region 9264	1953 bp upstream
Tssr9265	transcription start site region 9265	1984 bp upstream
Tssr14130	transcription start site region 14130	1319 bp upstream
Tssr14131	transcription start site region 14131	1263 bp upstream