rs33662206 SNP Detail

Summary

• ID
  rs33662206
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149978243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTTAGTTAC AATTCATAAA AAATTCAATA
  ACACCCCCTG CTTTATATCT TAACACTTGA ATTTAAAACC TTAGCCCAGC CTGGGGTACA
  AGCCTGACAC TGTGCCTCAA AACACAACAG TCGTATTGAT GTTGTGATCT TCTTTGAGAC
  R
  GTGCTTCTAA GTGATGGATG CTGTCATGTA TTATACAGTC ATCTGTTTGC TTGAACAAAT
  AGGTGAATGG ATAGATACTT ACTTTAGAAT TTACATGTTC CAGGAAATAA GGAGCTTCCT
  GATTCAAAAG AAGTGCTGGA AAAGGTTCTT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49513613	NES12839755	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	A	G	G	G		A	G	G	A		G
ss320045527	CHEV_1_151949622	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33662206					SNP	G	G	G	G	A	G	A	G	G	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513613	NES12839755	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149978243 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr420123	regulatory region 420123	1936 bp proximal
Tssr242	transcription start site region 242	308 bp upstream
Tssr9223	transcription start site region 9223	1543 bp downstream
Tssr9224	transcription start site region 9224	1435 bp downstream
Tssr9225	transcription start site region 9225	1310 bp downstream
Tssr9226	transcription start site region 9226	1297 bp downstream
Tssr9227	transcription start site region 9227	1219 bp downstream
Tssr9228	transcription start site region 9228	1179 bp downstream
Tssr9229	transcription start site region 9229	1166 bp downstream
Tssr9230	transcription start site region 9230	379 bp downstream
Tssr9231	transcription start site region 9231	346 bp downstream
Tssr9232	transcription start site region 9232	303 bp downstream
Tssr9233	transcription start site region 9233	150 bp upstream
Tssr9234	transcription start site region 9234	154 bp upstream
Tssr9235	transcription start site region 9235	194 bp upstream
Tssr9236	transcription start site region 9236	231 bp upstream
Tssr9237	transcription start site region 9237	250 bp upstream
Tssr9238	transcription start site region 9238	279 bp upstream
Tssr9239	transcription start site region 9239	320 bp upstream
Tssr9240	transcription start site region 9240	342 bp upstream
Tssr9241	transcription start site region 9241	368 bp upstream
Tssr9242	transcription start site region 9242	388 bp upstream
Tssr9243	transcription start site region 9243	512 bp upstream
Tssr9244	transcription start site region 9244	557 bp upstream
Tssr9245	transcription start site region 9245	577 bp upstream
Tssr9246	transcription start site region 9246	614 bp upstream
Tssr9247	transcription start site region 9247	753 bp upstream
Tssr9248	transcription start site region 9248	1173 bp upstream
Tssr9249	transcription start site region 9249	1200 bp upstream
Tssr9250	transcription start site region 9250	1368 bp upstream
Tssr9251	transcription start site region 9251	1414 bp upstream
Tssr9252	transcription start site region 9252	1469 bp upstream
Tssr9253	transcription start site region 9253	1499 bp upstream
Tssr9254	transcription start site region 9254	1526 bp upstream
Tssr9255	transcription start site region 9255	1545 bp upstream
Tssr9256	transcription start site region 9256	1785 bp upstream
Tssr9257	transcription start site region 9257	1809 bp upstream
Tssr9258	transcription start site region 9258	1832 bp upstream
Tssr9259	transcription start site region 9259	1857 bp upstream
Tssr9260	transcription start site region 9260	1912 bp upstream
Tssr9261	transcription start site region 9261	1967 bp upstream
Tssr9262	transcription start site region 9262	1975 bp upstream
Tssr9263	transcription start site region 9263	1997 bp upstream
Tssr14130	transcription start site region 14130	1230 bp upstream
Tssr14131	transcription start site region 14131	1174 bp upstream