rs33662207 SNP Detail

Summary

• ID
  rs33662207
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149978052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGATGACT GCCCAACTCC
  CATGGGTGTG AAGGGTGAGT GTAAAGAAAT ACAGACATAG CAACTGCAGT GAGGCTTGGG
  TGTGTACCTA GAAAAGGTGT CCATTATGTA AAACTGTAAA TAGTTTTGTC TTTAGTATGG
  TTATCCACAG AGGTTTATTA AAAGTACAGA TGTAGTATGG GAAAGTAAAT CTGCATTGAT
  R
  TAATGTCTTA GCCTTAGTAT GTTTTGCTAA ATAGAACTGA TGTTAGTTAC AATTCATAAA
  AAATTCAATA ACACCCCCTG CTTTATATCT TAACACTTGA ATTTAAAACC TTAGCCCAGC
  CTGGGGTACA AGCCTGACAC TGTGCCTCAA AACACAACAG TCGTATTGAT GTTGTGATCT
  TCTTTGAGAC GGTGCTTCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49513614	NES12839749	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33662207					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513614	NES12839749	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149978052 () rs orientation: forward

Symbol	Name	Function Class
Cpgi844	CpG island 844	1980 bp distal
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Tssr242	transcription start site region 242	499 bp upstream
Tssr9223	transcription start site region 9223	1352 bp downstream
Tssr9224	transcription start site region 9224	1244 bp downstream
Tssr9225	transcription start site region 9225	1119 bp downstream
Tssr9226	transcription start site region 9226	1106 bp downstream
Tssr9227	transcription start site region 9227	1028 bp downstream
Tssr9228	transcription start site region 9228	988 bp downstream
Tssr9229	transcription start site region 9229	975 bp downstream
Tssr9230	transcription start site region 9230	188 bp downstream
Tssr9231	transcription start site region 9231	155 bp downstream
Tssr9232	transcription start site region 9232	112 bp downstream
Tssr9233	transcription start site region 9233	341 bp upstream
Tssr9234	transcription start site region 9234	345 bp upstream
Tssr9235	transcription start site region 9235	385 bp upstream
Tssr9236	transcription start site region 9236	422 bp upstream
Tssr9237	transcription start site region 9237	441 bp upstream
Tssr9238	transcription start site region 9238	470 bp upstream
Tssr9239	transcription start site region 9239	511 bp upstream
Tssr9240	transcription start site region 9240	533 bp upstream
Tssr9241	transcription start site region 9241	559 bp upstream
Tssr9242	transcription start site region 9242	579 bp upstream
Tssr9243	transcription start site region 9243	703 bp upstream
Tssr9244	transcription start site region 9244	748 bp upstream
Tssr9245	transcription start site region 9245	768 bp upstream
Tssr9246	transcription start site region 9246	805 bp upstream
Tssr9247	transcription start site region 9247	944 bp upstream
Tssr9248	transcription start site region 9248	1364 bp upstream
Tssr9249	transcription start site region 9249	1391 bp upstream
Tssr9250	transcription start site region 9250	1559 bp upstream
Tssr9251	transcription start site region 9251	1605 bp upstream
Tssr9252	transcription start site region 9252	1660 bp upstream
Tssr9253	transcription start site region 9253	1690 bp upstream
Tssr9254	transcription start site region 9254	1717 bp upstream
Tssr9255	transcription start site region 9255	1736 bp upstream
Tssr9256	transcription start site region 9256	1976 bp upstream
Tssr9257	transcription start site region 9257	2000 bp upstream
Tssr14130	transcription start site region 14130	1039 bp upstream
Tssr14131	transcription start site region 14131	983 bp upstream