rs33662208 SNP Detail

Summary

• ID
  rs33662208
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149977848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             AGCTGGGAAG CCTTCTCCAA CCTCTCCTAC TACACCAGGG CCCTTCCTCC
  M
  GTAGCAGATG ACTGCCCAAC TCCCATGGGT GTGAAGGGTG AGTGTAAAGA           
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49513615	NES12839745	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	C	C	C	C	C		A	C	C	C		C
ss320045526	CHEV_1_151949227	CHEVERUD	SCREENING_POP	f	SNP											C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33662208					SNP	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513615	NES12839745	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149977848 () rs orientation: forward

Symbol	Name	Function Class
Cpgi844	CpG island 844	1776 bp distal
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Tssr242	transcription start site region 242	703 bp upstream
Tssr9222	transcription start site region 9222	1991 bp downstream
Tssr9223	transcription start site region 9223	1148 bp downstream
Tssr9224	transcription start site region 9224	1040 bp downstream
Tssr9225	transcription start site region 9225	915 bp downstream
Tssr9226	transcription start site region 9226	902 bp downstream
Tssr9227	transcription start site region 9227	824 bp downstream
Tssr9228	transcription start site region 9228	784 bp downstream
Tssr9229	transcription start site region 9229	771 bp downstream
Tssr9230	transcription start site region 9230	within coordinates
Tssr9231	transcription start site region 9231	32 bp upstream
Tssr9232	transcription start site region 9232	72 bp upstream
Tssr9233	transcription start site region 9233	545 bp upstream
Tssr9234	transcription start site region 9234	549 bp upstream
Tssr9235	transcription start site region 9235	589 bp upstream
Tssr9236	transcription start site region 9236	626 bp upstream
Tssr9237	transcription start site region 9237	645 bp upstream
Tssr9238	transcription start site region 9238	674 bp upstream
Tssr9239	transcription start site region 9239	715 bp upstream
Tssr9240	transcription start site region 9240	737 bp upstream
Tssr9241	transcription start site region 9241	763 bp upstream
Tssr9242	transcription start site region 9242	783 bp upstream
Tssr9243	transcription start site region 9243	907 bp upstream
Tssr9244	transcription start site region 9244	952 bp upstream
Tssr9245	transcription start site region 9245	972 bp upstream
Tssr9246	transcription start site region 9246	1009 bp upstream
Tssr9247	transcription start site region 9247	1148 bp upstream
Tssr9248	transcription start site region 9248	1568 bp upstream
Tssr9249	transcription start site region 9249	1595 bp upstream
Tssr9250	transcription start site region 9250	1763 bp upstream
Tssr9251	transcription start site region 9251	1809 bp upstream
Tssr9252	transcription start site region 9252	1864 bp upstream
Tssr9253	transcription start site region 9253	1894 bp upstream
Tssr9254	transcription start site region 9254	1921 bp upstream
Tssr9255	transcription start site region 9255	1940 bp upstream
Tssr14130	transcription start site region 14130	835 bp upstream
Tssr14131	transcription start site region 14131	779 bp upstream