rs33662209 SNP Detail

Summary

• ID
  rs33662209
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149977586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACCTTTGA AACAAATGGT
  TGACTAGGGT TTGGGTCAGA AGAGAAAAAT AGCTGTCTGT AGTTATTGGT GAGGGCCATG
  CCCAAATGTC TCTGTCATCA GCTATGGAAC AGGGAGTGGG TAGAAACTGA AAAGTCAAGA
  CTACTGGAGC AGAATGTCCT GTGTAAAATT TAAGCTTTAT TGAAGATGCA TTTTCAGTGC
  Y
  CTTTAAAGTT CAGCCATTGT ACAGCAGGGT ATCTTTGTCT GAAGGAAATC TAGTCTCTGT
  ACTTGCTACA TTGTACAATG ATAATTGATA TGCCCTTGTT GTTGTTGTTG TTTTTCATAT
  GAGGACCAAT GATTTTTTTT TCTTTAAAAT TTCAGCCAGA TCATATTTGA TTGACAGTCC
  ACCTACTTAC AATGTGCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49513616	NES12839741	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33662209					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513616	NES12839741	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149977586 () rs orientation: forward

Symbol	Name	Function Class
Cpgi844	CpG island 844	1514 bp distal
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Ptgs2os	prostaglandin-endoperoxide synthase 2, opposite strand	1961 bp upstream
Rr420122	regulatory region 420122	1794 bp distal
Tssr242	transcription start site region 242	965 bp upstream
Tssr9222	transcription start site region 9222	1729 bp downstream
Tssr9223	transcription start site region 9223	886 bp downstream
Tssr9224	transcription start site region 9224	778 bp downstream
Tssr9225	transcription start site region 9225	653 bp downstream
Tssr9226	transcription start site region 9226	640 bp downstream
Tssr9227	transcription start site region 9227	562 bp downstream
Tssr9228	transcription start site region 9228	522 bp downstream
Tssr9229	transcription start site region 9229	509 bp downstream
Tssr9230	transcription start site region 9230	142 bp upstream
Tssr9231	transcription start site region 9231	294 bp upstream
Tssr9232	transcription start site region 9232	334 bp upstream
Tssr9233	transcription start site region 9233	807 bp upstream
Tssr9234	transcription start site region 9234	811 bp upstream
Tssr9235	transcription start site region 9235	851 bp upstream
Tssr9236	transcription start site region 9236	888 bp upstream
Tssr9237	transcription start site region 9237	907 bp upstream
Tssr9238	transcription start site region 9238	936 bp upstream
Tssr9239	transcription start site region 9239	977 bp upstream
Tssr9240	transcription start site region 9240	999 bp upstream
Tssr9241	transcription start site region 9241	1025 bp upstream
Tssr9242	transcription start site region 9242	1045 bp upstream
Tssr9243	transcription start site region 9243	1169 bp upstream
Tssr9244	transcription start site region 9244	1214 bp upstream
Tssr9245	transcription start site region 9245	1234 bp upstream
Tssr9246	transcription start site region 9246	1271 bp upstream
Tssr9247	transcription start site region 9247	1410 bp upstream
Tssr9248	transcription start site region 9248	1830 bp upstream
Tssr9249	transcription start site region 9249	1857 bp upstream
Tssr14130	transcription start site region 14130	573 bp upstream
Tssr14131	transcription start site region 14131	517 bp upstream