rs33662210 SNP Detail

Summary

• ID
  rs33662210
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149977444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTTCATTC GTGTGGAGGA AGTGTGGTTC
  ACTTGTTCAT TGAATAAATA CCCATGGCTC ACAGAATTGT TCGGAACACA TAGAATTGTT
  CTGAACCTTT GAAACAAATG GTTGACTAGG GTTTGGGTCA GAAGAGAAAA ATAGCTGTCT
  R
  TAGTTATTGG TGAGGGCCAT GCCCAAATGT CTCTGTCATC AGCTATGGAA CAGGGAGTGG
  GTAGAAACTG AAAAGTCAAG ACTACTGGAG CAGAATGTCC TGTGTAAAAT TTAAGCTTTA
  TTGAAGATGC ATTTTCAGTG CTCTTTAAAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49513617	NES12839739	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G		A	G	G	G		G
ss320045525	CHEV_1_151948823	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33662210					SNP	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513617	NES12839739	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149977444 () rs orientation: forward

Symbol	Name	Function Class
Cpgi844	CpG island 844	1372 bp distal
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Ptgs2os	prostaglandin-endoperoxide synthase 2, opposite strand	1819 bp upstream
Rr420121	regulatory region 420121	1887 bp distal
Rr420122	regulatory region 420122	1652 bp distal
Tssr242	transcription start site region 242	1107 bp upstream
Tssr9221	transcription start site region 9221	1936 bp downstream
Tssr9222	transcription start site region 9222	1587 bp downstream
Tssr9223	transcription start site region 9223	744 bp downstream
Tssr9224	transcription start site region 9224	636 bp downstream
Tssr9225	transcription start site region 9225	511 bp downstream
Tssr9226	transcription start site region 9226	498 bp downstream
Tssr9227	transcription start site region 9227	420 bp downstream
Tssr9228	transcription start site region 9228	380 bp downstream
Tssr9229	transcription start site region 9229	367 bp downstream
Tssr9230	transcription start site region 9230	284 bp upstream
Tssr9231	transcription start site region 9231	436 bp upstream
Tssr9232	transcription start site region 9232	476 bp upstream
Tssr9233	transcription start site region 9233	949 bp upstream
Tssr9234	transcription start site region 9234	953 bp upstream
Tssr9235	transcription start site region 9235	993 bp upstream
Tssr9236	transcription start site region 9236	1030 bp upstream
Tssr9237	transcription start site region 9237	1049 bp upstream
Tssr9238	transcription start site region 9238	1078 bp upstream
Tssr9239	transcription start site region 9239	1119 bp upstream
Tssr9240	transcription start site region 9240	1141 bp upstream
Tssr9241	transcription start site region 9241	1167 bp upstream
Tssr9242	transcription start site region 9242	1187 bp upstream
Tssr9243	transcription start site region 9243	1311 bp upstream
Tssr9244	transcription start site region 9244	1356 bp upstream
Tssr9245	transcription start site region 9245	1376 bp upstream
Tssr9246	transcription start site region 9246	1413 bp upstream
Tssr9247	transcription start site region 9247	1552 bp upstream
Tssr9248	transcription start site region 9248	1972 bp upstream
Tssr9249	transcription start site region 9249	1999 bp upstream
Tssr14130	transcription start site region 14130	431 bp upstream
Tssr14131	transcription start site region 14131	375 bp upstream