rs33662212 SNP Detail

Summary

• ID
  rs33662212
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149976558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTAATT TTATTTTCTT
  TACACTAAAT TTTGACTATT GCACTAGGTC GATCCATTTT AATATTTAAA GGGATGCTTA
  ATAATTCTAG TCTGTGTGTC CGAGTTATTT TAAAAATGTT GGTAATGTGA ACTATGAAGT
  TAGGTCCTCT GTGTTTCTTG CTTAAGAATA CAAAGTTGCT TGCTATTTCC ATAAACAGTT
  R
  ATAAGACAGA CTTAATTAAA ATAATGACCT TTTTAAATCT GGGTCTACCT ATGTATTTGT
  CAAACTTATC ATTGTAAAGT TGACCCATAG TGACAGAATT AAATCCTTAA GTTAAGATGA
  GAACAACCAA GAGTAACTGA CAGGATATCT TATTTTTTTA ATGTAGCAAA TCCTTGCTGT
  TCCAATCCAT GTCAAAACCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49513621	NES12839728	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33662212					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513621	NES12839728	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149976558 () rs orientation: forward

Symbol	Name	Function Class
Cpgi844	CpG island 844	486 bp distal
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Ptgs2os	prostaglandin-endoperoxide synthase 2, opposite strand	933 bp upstream
Tssr242	transcription start site region 242	1993 bp upstream
Tssr9221	transcription start site region 9221	1050 bp downstream
Tssr9222	transcription start site region 9222	701 bp downstream
Tssr9223	transcription start site region 9223	139 bp upstream
Tssr9224	transcription start site region 9224	157 bp upstream
Tssr9225	transcription start site region 9225	364 bp upstream
Tssr9226	transcription start site region 9226	377 bp upstream
Tssr9227	transcription start site region 9227	397 bp upstream
Tssr9228	transcription start site region 9228	488 bp upstream
Tssr9229	transcription start site region 9229	510 bp upstream
Tssr9230	transcription start site region 9230	1170 bp upstream
Tssr9231	transcription start site region 9231	1322 bp upstream
Tssr9232	transcription start site region 9232	1362 bp upstream
Tssr9233	transcription start site region 9233	1835 bp upstream
Tssr9234	transcription start site region 9234	1839 bp upstream
Tssr9235	transcription start site region 9235	1879 bp upstream
Tssr9236	transcription start site region 9236	1916 bp upstream
Tssr9237	transcription start site region 9237	1935 bp upstream
Tssr9238	transcription start site region 9238	1964 bp upstream
Tssr14127	transcription start site region 14127	1252 bp upstream
Tssr14128	transcription start site region 14128	1197 bp upstream
Tssr14129	transcription start site region 14129	1122 bp upstream
Tssr14130	transcription start site region 14130	435 bp downstream
Tssr14131	transcription start site region 14131	458 bp downstream