rs33662523 SNP Detail

Summary

• ID
  rs33662523
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134127192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTCA AGGTTATCTT CAACTATAGA
  W
  AGACTTGATG AAGGATAACA TGAGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
ss45806055	mCV23753691	ABI	CRAMUS_MOUSE	f	SNP	T	A	T
ss144500641	ENSMUSSNP1770526	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A			T
ss321694848	CHEV_5_134574223	CHEVERUD	SCREENING_POP	f	SNP				A		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
rs33662523					SNP	T	A	T	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134127192 () rs orientation: forward

Symbol	Name	Function Class
Castor2	cytosolic arginine sensor for mTORC1 subunit 2	1395 bp upstream
Cpgi16713	CpG island 16713	767 bp proximal
Gm15627	predicted gene 15627	59 bp downstream
Rr621932	regulatory region 621932	313 bp proximal
Rr621933	regulatory region 621933	834 bp proximal
Tssr49079	transcription start site region 49079	1339 bp upstream
Tssr49080	transcription start site region 49080	1351 bp upstream
Tssr49081	transcription start site region 49081	1414 bp upstream