rs33662578 SNP Detail

Summary

• ID
  rs33662578
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:13211516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTAAGCC ATTAGCTTAA
  AAAAAAAAAA AAAAAGCTTC AATTCCAGAA CCACAGATGA AGAAACACCA TCTGCCCACC
  TACCACAATT CCAGGAAGCT AGGGAGGGAG GCCTTTGACC CAGGAGCCTG TAGTGGCTGT
  CCGGCGGGAA CAGTGAATCT GCTGTTCTTC ACAGAAAAAA ACCAAATGCA TACTCCGGTG
  Y
  GTGAAGTTAG TGCTCACCCT TCTGCTGTTT GTCTGACAAG GAGGCAGGCA CACTAGGCAG
  CTTTACTCAA TCTGGTGATG AGCCCAGGGA CAAAGAAAAG ACCACAGTGG CATTCTGATT
  TATTCCCAAA GGAACGGGGT TGGGGGGTGG GGGGCAGGGC ACAGAAATAA ACTGCAGTTT
  TACAGGTCAA AGACAGTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46841427	NES10965061	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33662578					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46841427	NES10965061	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:13211516 () rs orientation: forward

Symbol	Name	Function Class
Gm34661	predicted gene, 34661	within coordinates
Rr370548	regulatory region 370548	1282 bp upstream
Rr394754	regulatory region 394754	within coordinates
Rr690228	regulatory region 690228	1954 bp proximal
Tssr163015	transcription start site region 163015	29 bp downstream