rs33663004 SNP Detail

Summary

• ID
  rs33663004
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149976469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACattttta aaaatatatt taaaatGCTA
  AAACTTGACT GTTTTAATTT TATTTTCTTT ACACTAAATT TTGACTATTG CACTAGGTCG
  ATCCATTTTA ATATTTAAAG GGATGCTTAA TAATTCTAGT CTGTGTGTCC GAGTTATTTT
  W
  AAAATGTTGG TAATGTGAAC TATGAAGTTA GGTCCTCTGT GTTTCTTGCT TAAGAATACA
  AAGTTGCTTG CTATTTCCAT AAACAGTTGA TAAGACAGAC TTAATTAAAA TAATGACCTT
  TTTAAATCTG GGTCTACCTA TGTATTTGTC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49513623	NES12839723	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A	A	A	A	A		T	A	A	A		A
ss320045518	CHEV_1_151947848	CHEVERUD	SCREENING_POP	f	SNP											A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33663004					SNP	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513623	NES12839723	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149976469 () rs orientation: forward

Symbol	Name	Function Class
Cpgi844	CpG island 844	397 bp distal
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Ptgs2os	prostaglandin-endoperoxide synthase 2, opposite strand	844 bp upstream
Tssr9221	transcription start site region 9221	961 bp downstream
Tssr9222	transcription start site region 9222	612 bp downstream
Tssr9223	transcription start site region 9223	228 bp upstream
Tssr9224	transcription start site region 9224	246 bp upstream
Tssr9225	transcription start site region 9225	453 bp upstream
Tssr9226	transcription start site region 9226	466 bp upstream
Tssr9227	transcription start site region 9227	486 bp upstream
Tssr9228	transcription start site region 9228	577 bp upstream
Tssr9229	transcription start site region 9229	599 bp upstream
Tssr9230	transcription start site region 9230	1259 bp upstream
Tssr9231	transcription start site region 9231	1411 bp upstream
Tssr9232	transcription start site region 9232	1451 bp upstream
Tssr9233	transcription start site region 9233	1924 bp upstream
Tssr9234	transcription start site region 9234	1928 bp upstream
Tssr9235	transcription start site region 9235	1968 bp upstream
Tssr14127	transcription start site region 14127	1163 bp upstream
Tssr14128	transcription start site region 14128	1108 bp upstream
Tssr14129	transcription start site region 14129	1033 bp upstream
Tssr14130	transcription start site region 14130	524 bp downstream
Tssr14131	transcription start site region 14131	547 bp downstream