rs33663754 SNP Detail

Summary

• ID
  rs33663754
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:30804910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCAGACTC CTTATATAGT
  GGAAACTGGC CTTCATTTTT CAAGTGCTAG GAATGCACAC CCAGTTTGTG TTTTAGCTGT
  TAAACACCCT ACTGGAAGCT ACAACTCAAC TCAAATGCTC CCTTTACTGA AAGATGTGAG
  CAATTCAACG GGCTGGGATC CCTAGGGACA TTTCTCTCAG GACTCCAGTT CTCTGGAGAT
  Y
  CTGGAGAAAA GAGATTCCCA CGCTGTAACT ATTACCAACT GCCAGTCTCA ACCTCTCAAA
  ATTGTTTATA AAATGCTCTA AGATTGCCTA AGCATCTCTA CATGACCCCG AGCGCCCATT
  TTACAAACCG GGAGGCCAAG AGGCTGGGAG CGTACGCTGC AGAAGTACAG GGCTCGCTCA
  GCATGCATGA GACACTAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45805963	mCV25292949	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss148186581	ENSMUSSNP4411859	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33663754					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:30804910 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15682	CpG island 15682	167 bp proximal
D5Mit389	DNA Segment, Chr 5 Massachusetts Institute of Technology 389	272 bp distal
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	272 bp distal
Mir5625	microRNA 5625	370 bp upstream
Rr609028	regulatory region 609028	within coordinates
Slc35f6	solute carrier family 35, member F6	367 bp upstream
Tssr45603	transcription start site region 45603	355 bp upstream
Tssr45604	transcription start site region 45604	369 bp upstream
Tssr45605	transcription start site region 45605	439 bp upstream