rs33663983 SNP Detail

Summary

• ID
  rs33663983
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24926073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTTAAGGCG TGAGCCACCA TGCCCAGCTT TGCCTATCTT
  TCTTAATAGT CAACACCACA GCGTCACTGC TCCTGGCCCA GGCACTATAA CAGGTCATTT
  S
  CTTCTGCCCT CTATTTGGGC TGGGCTGGGC TTTCCAAATT CAAATGCTCT GCCCTCCAAC
  CTCCTAAGTC CAGTCCGTGG AAGTCTGCCC ATCAAAATA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss39563752	mCV24348123	ABI	CRAMUS_MOUSE	f	SNP		C					G
ss60552609	NES16570758	PERLEGEN	MM_PANEL2	f	SNP		C	G	G	C	G		G	C	G	G	G	C	G	G
ss145361729	ENSMUSSNP4279053	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33663983					SNP	C	C	G	G	C	G	G	G	C	G	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60552609	NES16570758	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24926073 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8740	CpG island 8740	313 bp proximal
Rr405091	regulatory region 405091	453 bp upstream
Rr523395	regulatory region 523395	within coordinates
Rr523396	regulatory region 523396	551 bp proximal
Rr523397	regulatory region 523397	1561 bp proximal
Rr523398	regulatory region 523398	1763 bp proximal
Tbl3	transducin (beta)-like 3	within coordinates
Tssr146772	transcription start site region 146772	508 bp downstream
Tssr146773	transcription start site region 146773	518 bp downstream