rs33664100 SNP Detail

Summary

• ID
  rs33664100
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:118621928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACCTTTAT CATTTGAAAA
  AATGCCTGGC TGGTTTCCCT TGTTTCAGAA CACCAGGCAT GGAAAAAGCC AGGTAGTGGA
  GTTTGAATAC TTTTCTTGAA ACGCTCTGAC TTGCATTTCT CTATGGGGGA CATAAATAAC
  CCACCAAGGT AAAACAAGGA TTCAACTGCC AACTTTCCAG AAAATGTTGA CACAATAGCT
  Y
  CTGAAAAACA CATTGAAGTA CGAATTCAAA AGTGAAGAGG ACAGCTCTTT CTACCCTCTT
  TTGCAGCCCC TCTAGGACAA TCTTAACTCA GGAAGCTATG CAGTAGAAAC ATGTGTGCCA
  AAGGCTACAT TAGACATCTC ATATTCATTT TTTTAAGGTG ATGGTTCAAA TATGACTCAC
  CCAACTCTAC TCTCCTTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47326078	NES11373590	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33664100					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47326078	NES11373590	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:118621928 () rs orientation: forward

Symbol	Name	Function Class
Gm59652	predicted gene, 59652	366 bp upstream
Rr387829	regulatory region 387829	675 bp upstream
Rr474253	regulatory region 474253	1094 bp proximal
Tssr118148	transcription start site region 118148	315 bp upstream