rs33664104 SNP Detail

Summary

• ID
  rs33664104
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:13224686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTGGTCC TGCTAGGAGC
  CTTATTCAGG AATCTACAGG CTAAGACAGA GGTATTGTCA GGGTTGAAAT CTTTCTGGAG
  GCCATAAGAA AGTCTTTAGT GATGGTTGGC AAAATTCAGG TCTGTTCAGT TGTAGGATGG
  AGACCTGCCT ATTCTTTCTG AAGTCCAGTC AGGGGCCTGC TCTGCATTCT GGACCAGATG
  R
  CCTCAATACT GCTCGAAACC TTTGTAGTGT TTTGGAATGC TGATCATCTG CTTCCCTTCC
  TCTCTGGTCT ATGTAAAGCA CTAAGAGACT TGTATGAAGC TGGGCTTGGT GGTGAAGGCC
  CACATTCCTG CTACTTTTAA ATTTTAAAAA CACTTTCTTA AAGATTTATT TTCTTTTGTG
  TATATATAAG TGTTTTGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46841532	NES10964604	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33664104					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46841532	NES10964604	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:13224686 () rs orientation: forward

Symbol	Name	Function Class
Rr690230	regulatory region 690230	749 bp distal
Tssr5595	transcription start site region 5595	173 bp downstream