rs33664249 SNP Detail

Summary

• ID
  rs33664249
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:13212971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCAACTC GCCTCCCCAT
  GCCCTGAATA TACTCTATTC TATACTATAC TGTCGTTAGT GTGGCTGGTC CCTTAGGGGG
  AAGGGATGCC TCAGCATGGG CCCGCAGAGG CACCCCCTCC CCCCATACCT GACTGCACAT
  TCACCAGACA TATTCCTTTT CTCTTTATTT GTATAAAACA CAACAAGGAG AATTACTGAT
  M
  GTTATCACTG CAGCAGGATG AGACCTTGTC TTGAACAAGA CAATGTTACA CAAAACAAAA
  CAAAGAAGTA AGACCAACGG AACAAAGAGA TGCCCCTCCC CCCCAACTCT GGCTACCGGT
  GCCTGTGCTT GTTTAACAAC TTCCAATCAC ACCGAAGGCT TAATGTTAGT TTGCAACCAG
  GATGCCGGGC TTCAACCTAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46841451	NES10964960	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33664249					SNP	A	A	A	A	A	C	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46841451	NES10964960	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:13212971 () rs orientation: forward

Symbol	Name	Function Class
Gm34661	predicted gene, 34661	within coordinates
Rr370548	regulatory region 370548	within coordinates
Rr394754	regulatory region 394754	1438 bp downstream
Rr690228	regulatory region 690228	499 bp proximal
Tssr163015	transcription start site region 163015	1410 bp upstream