rs33664989 SNP Detail

Summary

• ID
  rs33664989
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:13225177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGAGCCAT CATGTGGGTG
  CTGGGAAATG AACACAGGTC CTCTCTAAGA GAAGCCCAGG CACTTACTGC TGAGCCATCT
  CTCTAGCCCC AGTTTCAAAC TTTTAGACAA TTGCCTGGGA GGCAGATGTA AGGGAATCTA
  AGATTCAAGG CTCACCTTGG TCACAGAGTG AGCTCAAGAT TTTTATATGT TAAGGAGTGT
  Y
  GCTTTCTTTT AAAATGTTTT CTTTGTGTGT GTGTGCGGTA TATGTTTGTG TGCACACATG
  TGTGCGGGTA TGCCTGTGTG GAGGCCAGAG GCTGACATTT AAGTGTTTAT TGCATCTTCA
  TACATATGTG TGTGTGTGTG TGTGTGTGTG TGTATAAAAG ATAAGCTGTC CTGGAATTCT
  CTATGTAGAC CAGGCTGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46841547	NES10964588	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33664989					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46841547	NES10964588	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:13225177 () rs orientation: forward

Symbol	Name	Function Class
Rr690230	regulatory region 690230	1240 bp distal
Tssr5595	transcription start site region 5595	664 bp downstream