rs33664992 SNP Detail

Summary

• ID
  rs33664992
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:13225719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGCTGCAA ACTCAGCGAT
  CCGCCTGCCT CTGCCTACAG AGTGCTGGGA TTAAAGGTAC GTGCGTGCCA CTACTGCCAG
  GTTTTGAGGA TGTTCTTGAT GTAGTGAGGA TGATCTTGAA TTCTTGAGCC TCTCAAGTGC
  TGATGTAAGA GGCATGTGTC AGCACATCTG GTCTGCCAAG TTCTTTTTTA CTGCAGAGAT
  R
  CAAAGAAATT GCTGTATAAA AGTGAACATA CGATATACAC AAAACAAAAT AAAAATTGAG
  CCATGTATTA TAGCAAGCAC CTGTAATGCA CATGTGGGAT GCTGGGGCAG GAGGATTGAG
  AATTTGTAGC TAAATGCTCT GCCGTGGAGC TATATCCCTA GGATTGAGAG TTTGAGGCCA
  GCCTGGTCAC AAAAAACAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46841550	NES10964567	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33664992					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46841550	NES10964567	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:13225719 () rs orientation: forward

Symbol	Name	Function Class
Gm61748	predicted gene, 61748	1530 bp upstream
Rr690230	regulatory region 690230	1782 bp distal
Tssr5595	transcription start site region 5595	1206 bp downstream