rs33665029 SNP Detail

Summary

• ID
  rs33665029
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41489665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCC CTTTCCTTTG GCTTCCAGCC
  R
  TGCATCTGAA GTCTCACCGT CAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss46303169	mCV23834224	ABI	CRAMUS_MOUSE	f	SNP	A	A	A				G		G
ss61386166	NES16764739	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	G		G	G	A	A		G	A	G		A
ss136358639	ENSMUSSNP1423299	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
ss322927312	CHEV_9_41386452	CHEVERUD	SCREENING_POP	f	SNP												A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs33665029					SNP	A	A	A	G	A	G	G	G	G	A	A	A	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61386166	NES16764739	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41489665 () rs orientation: forward

Symbol	Name	Function Class
Gm51670	predicted gene, 51670	within coordinates
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Rr677060	regulatory region 677060	635 bp proximal
Rr677061	regulatory region 677061	1139 bp proximal
Rr677062	regulatory region 677062	1880 bp proximal
Tssr84512	transcription start site region 84512	1291 bp upstream
Tssr84513	transcription start site region 84513	1319 bp upstream
Tssr84514	transcription start site region 84514	1481 bp upstream
Tssr84515	transcription start site region 84515	1566 bp upstream
Tssr84516	transcription start site region 84516	1601 bp upstream
Tssr84517	transcription start site region 84517	1634 bp upstream
Tssr88995	transcription start site region 88995	1143 bp downstream
Tssr88996	transcription start site region 88996	1177 bp downstream