ATACTTTTCT TGAAACGCTC TGACTTGCAT TTCTCTATGG GGGACATAAA TAACCCACCA AGGTAAAACA AGGATTCAAC TGCCAACTTT CCAGAAAATG TTGACACAAT AGCTTCTGAA AAACACATTG AAGTACGAAT TCAAAAGTGA AGAGGACAGC TCTTTCTACC CTCTTTTGCA GCCCCTCTAG GACAATCTTA R CTCAGGAAGC TATGCAGTAG AAACATGTGT GCCAAAGGCT ACATTAGACA TCTCATATTC ATTTTTTTAA GGTGATGGTT CAAATATGAC TCACCCAACT CTACTCTCCT TAGACTGGAA GAACTTATTT ATTTCTTAAG GAAAATATTG TGTGTCACCT GATACAACCA GACAGGCTAC CTAAGTATAC CAAAAGAAAG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss47326084 | NES11373592 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | A | A | A | A | A | A | G | A | A | A |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
||||
rs33665036 | SNP | A | A | A | A | A | A | A | A | A | A | G | A | A | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss47326084 | NES11373592 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr12:118622014 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm59652 | predicted gene, 59652 | 452 bp upstream | ||||||
Rr387829 | regulatory region 387829 | 589 bp upstream | ||||||
Rr474253 | regulatory region 474253 | 1008 bp proximal | ||||||
Tssr118148 | transcription start site region 118148 | 401 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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