rs33665634 SNP Detail

Summary

• ID
  rs33665634
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:11985914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCTCCATCT CTGGCTGTTG TGATGGGAAG TGATGGTTAA
  GAGCCCCACA TCCAGCCCTA CTGGGGGCTA TTTTGCTGGA TTAGAACAGC ACCGCTCTGG
  R
  GTCATACCCA AATTTTTCCT GGGAGTCAAC AGTGGTTAAG TCTCAAACAA GAGAAGGTTA
  GAAGCAATGG GCTAAGCAGA TGGGGCTGGC TCCCAGGTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39563464	mCV22930683	ABI	CRAMUS_MOUSE	f	SNP		A					G
ss48347129	NES12242169	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	A		G	A	G	G		A	G	G	A		G
ss325300433	CHEV_17_11959893	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33665634					SNP	G	A	G	G	G	A	G	G	A	G	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48347129	NES12242169	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:11985914 () rs orientation: forward

Symbol	Name	Function Class
Prkn	parkin RBR E3 ubiquitin protein ligase	within coordinates
Rr334163	regulatory region 334163	314 bp distal
Rr334164	regulatory region 334164	1887 bp proximal