rs33665895 SNP Detail

Summary

• ID
  rs33665895
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:118622803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTCTCCT ACACGGACCT
  CAGTCAGCCT ATTGCTAAGG CAGAGCTTCC AAAAACACTA TCCCATCTCC CAGTATCTTC
  TTTTACTCTT TCTAACTTTG TGCCCACACA CAGAGAAAAG GACACATTTT TAAAGAGTCT
  AAAAATATAT GCCATCCCTA CATTTGCCTC TGAGGCAGTT GGGCAGTTTG TGCTGTCGAG
  Y
  GCTCTCGTAC ATAAACCATC ACCCAGATGT TCATTCTCTA ATTAAATAGT TTGAATCGAC
  ATCTGTATGA TTTCTGCCAA GTTTATTAAA TGGGATTTTT TTATATTGTA CGTCCATGTT
  GGGTACTGTA GAGAAAATAC ACTTTTTTTT TTTTTTTAAA TGTAAGGCTG ACTATATGTT
  TTGAACAGGA AGATTCCTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47326093	NES11373595	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33665895					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47326093	NES11373595	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:118622803 () rs orientation: forward

Symbol	Name	Function Class
Gm59652	predicted gene, 59652	1241 bp upstream
Rr387829	regulatory region 387829	within coordinates
Rr474253	regulatory region 474253	219 bp proximal
Rr474254	regulatory region 474254	1755 bp proximal
Tssr118148	transcription start site region 118148	1190 bp upstream