rs33665898 SNP Detail

Summary

• ID
  rs33665898
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:118623634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGAGTTT GAGAAGGAAG
  GGAGAAAAAA GGACCTATGC CTTCTCAAAA TGCTGACAAT ACTATTTAGC CCCCTTTTGG
  CAATGATATA CCTAACATTT TAAAGCCGCC TTTCACTCCA AATGGAAGGA AGTATAATAC
  AACATTCAAA CACATAGTGG TTTCATTTTG AAACAGTCAT TTGCTGTATT CAGAGGGAAA
  R
  CGTCTATAGT TACCAGATGC AAAGAAAATC CATCATTCAT GATACATACG TGTAGGTTGG
  ACACACACAC ACTTTACATT GTTTTTGCAG AACACTAAAT AACCTCGAAT CTTCCACTTA
  GCCCAGAGAA AAACCCCCTA CAGCAGATGC TCGAGAGTGG TTTCATGCCC ATTGCTTTCT
  GCAGTCTATG AGACTGACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47326096	NES11373596	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33665898					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47326096	NES11373596	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:118623634 () rs orientation: forward

Symbol	Name	Function Class
Gm31626	predicted gene, 31626	1803 bp upstream
Rr387829	regulatory region 387829	within coordinates
Rr474253	regulatory region 474253	within coordinates
Rr474254	regulatory region 474254	924 bp proximal
Rr474255	regulatory region 474255	1435 bp proximal