rs33666512 SNP Detail

Summary

• ID
  rs33666512
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149983034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             ACCAAGATGC TAGAAATATA GGGAGTTCCT GACAAGAAAT TTCCATTCTT
  R
  TTCTGAAGAA TTGCTTTCTT ACTTAAAAAC AAAGACAGTT TGTGAGTAGT           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49513583	NES12839559	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	G	A	A	A		G	A	A	G		A
ss320045552	CHEV_1_151954413	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33666512					SNP	A	A	A	G	A	G	A	A	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513583	NES12839559	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149983034 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Tssr9269	transcription start site region 9269	1878 bp downstream
Tssr9270	transcription start site region 9270	1847 bp downstream
Tssr9271	transcription start site region 9271	1824 bp downstream
Tssr9272	transcription start site region 9272	1793 bp downstream
Tssr9273	transcription start site region 9273	1749 bp downstream
Tssr9274	transcription start site region 9274	1729 bp downstream
Tssr9275	transcription start site region 9275	1697 bp downstream
Tssr9276	transcription start site region 9276	1683 bp downstream
Tssr9277	transcription start site region 9277	1627 bp downstream
Tssr9278	transcription start site region 9278	1606 bp downstream
Tssr9279	transcription start site region 9279	1588 bp downstream
Tssr9280	transcription start site region 9280	1488 bp downstream
Tssr9281	transcription start site region 9281	1468 bp downstream
Tssr9282	transcription start site region 9282	1434 bp downstream
Tssr9283	transcription start site region 9283	1419 bp downstream
Tssr9284	transcription start site region 9284	1407 bp downstream
Tssr9285	transcription start site region 9285	1393 bp downstream
Tssr9286	transcription start site region 9286	1314 bp downstream
Tssr9287	transcription start site region 9287	798 bp downstream
Tssr9288	transcription start site region 9288	684 bp downstream
Tssr9289	transcription start site region 9289	667 bp downstream
Tssr9290	transcription start site region 9290	513 bp downstream
Tssr9291	transcription start site region 9291	465 bp downstream
Tssr9292	transcription start site region 9292	337 bp downstream
Tssr9293	transcription start site region 9293	321 bp downstream
Tssr9294	transcription start site region 9294	298 bp downstream
Tssr9295	transcription start site region 9295	271 bp downstream
Tssr9296	transcription start site region 9296	259 bp downstream
Tssr9297	transcription start site region 9297	246 bp downstream
Tssr9298	transcription start site region 9298	220 bp downstream
Tssr9299	transcription start site region 9299	202 bp downstream
Tssr9300	transcription start site region 9300	183 bp downstream
Tssr9301	transcription start site region 9301	50 bp downstream
Tssr9302	transcription start site region 9302	26 bp downstream
Tssr9303	transcription start site region 9303	34 bp upstream
Tssr9304	transcription start site region 9304	58 bp upstream
Tssr9305	transcription start site region 9305	76 bp upstream
Tssr9306	transcription start site region 9306	88 bp upstream
Tssr9307	transcription start site region 9307	92 bp upstream
Tssr9308	transcription start site region 9308	125 bp upstream
Tssr9309	transcription start site region 9309	139 bp upstream
Tssr9310	transcription start site region 9310	170 bp upstream
Tssr9311	transcription start site region 9311	182 bp upstream
Tssr9312	transcription start site region 9312	207 bp upstream
Tssr9313	transcription start site region 9313	227 bp upstream
Tssr9314	transcription start site region 9314	238 bp upstream
Tssr9315	transcription start site region 9315	332 bp upstream
Tssr9316	transcription start site region 9316	515 bp upstream
Tssr9317	transcription start site region 9317	792 bp upstream
Tssr9318	transcription start site region 9318	1521 bp upstream