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rs33666513 SNP Detail
Summary
  • ID
    rs33666513
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:149982354 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAACGTAAAT CTCCAAAACT
AGTAGAAATT ATGTCATGAT TGATGGTTAA GATACCATGT CAGGGATTGT CTTTTCTTAG
AAGTAGTGAA AGCTACTTAC TATGACAATC AGACCTTCCT TGTATGTCAA AATGCTGGTG
TGGAAGGTGG TGGAGCCCGT GCTGCTCTGT CTTAACTATG AGTGTGAGCT TTAAAGCTCG
Y
TGATGAGTGG TAGCCAGCAA AGCCTAGAGC AACAAAAGCT TCTACAAAGG AACTAACCAA
GAACAAAGAA GGGTTCCCAA TTAAAGATCA CATTCAGGGT TAAACTTCCA AAGGAGACAT
CCTGATCCTG GTTTTGTGCT GGCCTGGTAC TCAGTAGGTT TTTGCTGTGA GGTTAAAGAC
TTGCCAGGCT GAACTTCGAA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss49513584 NES12839557 PERLEGEN MM_PANEL2 f SNP T T T T T T T T T T T T T C T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33666513 SNP T T T T T T T T T T T T T C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss49513584 NES12839557 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:149982354 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Ptgs2 prostaglandin-endoperoxide synthase 2 within coordinates
Tssr9266 transcription start site region 9266 1940 bp downstream
Tssr9267 transcription start site region 9267 1605 bp downstream
Tssr9268 transcription start site region 9268 1535 bp downstream
Tssr9269 transcription start site region 9269 1198 bp downstream
Tssr9270 transcription start site region 9270 1167 bp downstream
Tssr9271 transcription start site region 9271 1144 bp downstream
Tssr9272 transcription start site region 9272 1113 bp downstream
Tssr9273 transcription start site region 9273 1069 bp downstream
Tssr9274 transcription start site region 9274 1049 bp downstream
Tssr9275 transcription start site region 9275 1017 bp downstream
Tssr9276 transcription start site region 9276 1003 bp downstream
Tssr9277 transcription start site region 9277 947 bp downstream
Tssr9278 transcription start site region 9278 926 bp downstream
Tssr9279 transcription start site region 9279 908 bp downstream
Tssr9280 transcription start site region 9280 808 bp downstream
Tssr9281 transcription start site region 9281 788 bp downstream
Tssr9282 transcription start site region 9282 754 bp downstream
Tssr9283 transcription start site region 9283 739 bp downstream
Tssr9284 transcription start site region 9284 727 bp downstream
Tssr9285 transcription start site region 9285 713 bp downstream
Tssr9286 transcription start site region 9286 634 bp downstream
Tssr9287 transcription start site region 9287 118 bp downstream
Tssr9288 transcription start site region 9288 4 bp downstream
Tssr9289 transcription start site region 9289 6 bp upstream
Tssr9290 transcription start site region 9290 162 bp upstream
Tssr9291 transcription start site region 9291 208 bp upstream
Tssr9292 transcription start site region 9292 327 bp upstream
Tssr9293 transcription start site region 9293 356 bp upstream
Tssr9294 transcription start site region 9294 376 bp upstream
Tssr9295 transcription start site region 9295 392 bp upstream
Tssr9296 transcription start site region 9296 414 bp upstream
Tssr9297 transcription start site region 9297 423 bp upstream
Tssr9298 transcription start site region 9298 449 bp upstream
Tssr9299 transcription start site region 9299 471 bp upstream
Tssr9300 transcription start site region 9300 488 bp upstream
Tssr9301 transcription start site region 9301 622 bp upstream
Tssr9302 transcription start site region 9302 652 bp upstream
Tssr9303 transcription start site region 9303 714 bp upstream
Tssr9304 transcription start site region 9304 738 bp upstream
Tssr9305 transcription start site region 9305 756 bp upstream
Tssr9306 transcription start site region 9306 768 bp upstream
Tssr9307 transcription start site region 9307 772 bp upstream
Tssr9308 transcription start site region 9308 805 bp upstream
Tssr9309 transcription start site region 9309 819 bp upstream
Tssr9310 transcription start site region 9310 850 bp upstream
Tssr9311 transcription start site region 9311 862 bp upstream
Tssr9312 transcription start site region 9312 887 bp upstream
Tssr9313 transcription start site region 9313 907 bp upstream
Tssr9314 transcription start site region 9314 918 bp upstream
Tssr9315 transcription start site region 9315 1012 bp upstream
Tssr9316 transcription start site region 9316 1195 bp upstream
Tssr9317 transcription start site region 9317 1472 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory