rs33666533 SNP Detail

Summary

• ID
  rs33666533
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144108989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAACCCAAT CATTAATCCA CTTCTTTCTT TCTTTCTTTC
  TTTTTTTTTT TTTTTTTTTT GGTTTTTCAA GACAGGGTAG CCCCCTTGCT GTCCTGGAAC
  R
  TACTCTGTAT GTAGACCAGA CTCAGAAATC CACCTGCCTC TGCCTCCCAA GCGCTGGGAT
  TAAAGCCGTG CACCGGGCCA TTAGTCCATT CCTAGGTGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45306327	mCV22515765	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss147789004	ENSMUSSNP2799254	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33666533					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144108989 () rs orientation: forward

Symbol	Name	Function Class
Rr566422	regulatory region 566422	668 bp distal
Rr566423	regulatory region 566423	315 bp proximal
Rr566424	regulatory region 566424	1881 bp proximal
Snord17	small nucleolar RNA, C/D box 17	867 bp upstream
Snx5	sorting nexin 5	Intron
Tssr20523	transcription start site region 20523	974 bp downstream
Tssr26593	transcription start site region 26593	851 bp upstream