rs33667744 SNP Detail

Summary

• ID
  rs33667744
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149982218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAGGTTTGT ACCGACATGG AGTAAACAGC TATCATAAAC
  GTAAATCTCC AAAACTAGTA GAAATTATGT CATGATTGAT GGTTAAGATA CCATGTCAGG
  K
  ATTGTCTTTT CTTAGAAGTA GTGAAAGCTA CTTACTATGA CAATCAGACC TTCCTTGTAT
  GTCAAAATGC TGGTGTGGAA GGTGGTGGAG CCCGTGCTGC                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49513585	NES12839556	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33667744					SNP	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513585	NES12839556	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149982218 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	1818 bp distal
Rr24983	regulatory region 24983	1922 bp distal
Tssr9262	transcription start site region 9262	1981 bp downstream
Tssr9263	transcription start site region 9263	1969 bp downstream
Tssr9264	transcription start site region 9264	1920 bp downstream
Tssr9265	transcription start site region 9265	1893 bp downstream
Tssr9266	transcription start site region 9266	1804 bp downstream
Tssr9267	transcription start site region 9267	1469 bp downstream
Tssr9268	transcription start site region 9268	1399 bp downstream
Tssr9269	transcription start site region 9269	1062 bp downstream
Tssr9270	transcription start site region 9270	1031 bp downstream
Tssr9271	transcription start site region 9271	1008 bp downstream
Tssr9272	transcription start site region 9272	977 bp downstream
Tssr9273	transcription start site region 9273	933 bp downstream
Tssr9274	transcription start site region 9274	913 bp downstream
Tssr9275	transcription start site region 9275	881 bp downstream
Tssr9276	transcription start site region 9276	867 bp downstream
Tssr9277	transcription start site region 9277	811 bp downstream
Tssr9278	transcription start site region 9278	790 bp downstream
Tssr9279	transcription start site region 9279	772 bp downstream
Tssr9280	transcription start site region 9280	672 bp downstream
Tssr9281	transcription start site region 9281	652 bp downstream
Tssr9282	transcription start site region 9282	618 bp downstream
Tssr9283	transcription start site region 9283	603 bp downstream
Tssr9284	transcription start site region 9284	591 bp downstream
Tssr9285	transcription start site region 9285	577 bp downstream
Tssr9286	transcription start site region 9286	498 bp downstream
Tssr9287	transcription start site region 9287	9 bp upstream
Tssr9288	transcription start site region 9288	125 bp upstream
Tssr9289	transcription start site region 9289	142 bp upstream
Tssr9290	transcription start site region 9290	298 bp upstream
Tssr9291	transcription start site region 9291	344 bp upstream
Tssr9292	transcription start site region 9292	463 bp upstream
Tssr9293	transcription start site region 9293	492 bp upstream
Tssr9294	transcription start site region 9294	512 bp upstream
Tssr9295	transcription start site region 9295	528 bp upstream
Tssr9296	transcription start site region 9296	550 bp upstream
Tssr9297	transcription start site region 9297	559 bp upstream
Tssr9298	transcription start site region 9298	585 bp upstream
Tssr9299	transcription start site region 9299	607 bp upstream
Tssr9300	transcription start site region 9300	624 bp upstream
Tssr9301	transcription start site region 9301	758 bp upstream
Tssr9302	transcription start site region 9302	788 bp upstream
Tssr9303	transcription start site region 9303	850 bp upstream
Tssr9304	transcription start site region 9304	874 bp upstream
Tssr9305	transcription start site region 9305	892 bp upstream
Tssr9306	transcription start site region 9306	904 bp upstream
Tssr9307	transcription start site region 9307	908 bp upstream
Tssr9308	transcription start site region 9308	941 bp upstream
Tssr9309	transcription start site region 9309	955 bp upstream
Tssr9310	transcription start site region 9310	986 bp upstream
Tssr9311	transcription start site region 9311	998 bp upstream
Tssr9312	transcription start site region 9312	1023 bp upstream
Tssr9313	transcription start site region 9313	1043 bp upstream
Tssr9314	transcription start site region 9314	1054 bp upstream
Tssr9315	transcription start site region 9315	1148 bp upstream
Tssr9316	transcription start site region 9316	1331 bp upstream
Tssr9317	transcription start site region 9317	1608 bp upstream