rs33667745 SNP Detail

Summary

• ID
  rs33667745
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149982158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GATACTGAC AACAATCTCA TTTTTTAAAA
  TGTTGTCTTG AGACAAATAA TTTGAAATTT CTAAATTGGG AGTTTGAATC ACTTTTGAAA
  GCTCTTACTT TCTTAAGCTG TCAGGTTTGT ACCGACATGG AGTAAACAGC TATCATAAAC
  R
  TAAATCTCCA AAACTAGTAG AAATTATGTC ATGATTGATG GTTAAGATAC CATGTCAGGG
  ATTGTCTTTT CTTAGAAGTA GTGAAAGCTA CTTACTATGA CAATCAGACC TTCCTTGTAT
  GTCAAAATGC TGGTGTGGAA GGTGGTGGAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49513586	NES12839554	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	A	G	G	G	G	G		A		G	G	G		G
ss145704616	ENSMUSSNP130418	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G					A
ss320045550	CHEV_1_151953537	CHEVERUD	SCREENING_POP	f	SNP												G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33667745					SNP	G	G	G	G	G	A	G	G	G	G	G	G	A	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513586	NES12839554	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149982158 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Tssr9260	transcription start site region 9260	1961 bp downstream
Tssr9261	transcription start site region 9261	1942 bp downstream
Tssr9262	transcription start site region 9262	1921 bp downstream
Tssr9263	transcription start site region 9263	1909 bp downstream
Tssr9264	transcription start site region 9264	1860 bp downstream
Tssr9265	transcription start site region 9265	1833 bp downstream
Tssr9266	transcription start site region 9266	1744 bp downstream
Tssr9267	transcription start site region 9267	1409 bp downstream
Tssr9268	transcription start site region 9268	1339 bp downstream
Tssr9269	transcription start site region 9269	1002 bp downstream
Tssr9270	transcription start site region 9270	971 bp downstream
Tssr9271	transcription start site region 9271	948 bp downstream
Tssr9272	transcription start site region 9272	917 bp downstream
Tssr9273	transcription start site region 9273	873 bp downstream
Tssr9274	transcription start site region 9274	853 bp downstream
Tssr9275	transcription start site region 9275	821 bp downstream
Tssr9276	transcription start site region 9276	807 bp downstream
Tssr9277	transcription start site region 9277	751 bp downstream
Tssr9278	transcription start site region 9278	730 bp downstream
Tssr9279	transcription start site region 9279	712 bp downstream
Tssr9280	transcription start site region 9280	612 bp downstream
Tssr9281	transcription start site region 9281	592 bp downstream
Tssr9282	transcription start site region 9282	558 bp downstream
Tssr9283	transcription start site region 9283	543 bp downstream
Tssr9284	transcription start site region 9284	531 bp downstream
Tssr9285	transcription start site region 9285	517 bp downstream
Tssr9286	transcription start site region 9286	438 bp downstream
Tssr9287	transcription start site region 9287	69 bp upstream
Tssr9288	transcription start site region 9288	185 bp upstream
Tssr9289	transcription start site region 9289	202 bp upstream
Tssr9290	transcription start site region 9290	358 bp upstream
Tssr9291	transcription start site region 9291	404 bp upstream
Tssr9292	transcription start site region 9292	523 bp upstream
Tssr9293	transcription start site region 9293	552 bp upstream
Tssr9294	transcription start site region 9294	572 bp upstream
Tssr9295	transcription start site region 9295	588 bp upstream
Tssr9296	transcription start site region 9296	610 bp upstream
Tssr9297	transcription start site region 9297	619 bp upstream
Tssr9298	transcription start site region 9298	645 bp upstream
Tssr9299	transcription start site region 9299	667 bp upstream
Tssr9300	transcription start site region 9300	684 bp upstream
Tssr9301	transcription start site region 9301	818 bp upstream
Tssr9302	transcription start site region 9302	848 bp upstream
Tssr9303	transcription start site region 9303	910 bp upstream
Tssr9304	transcription start site region 9304	934 bp upstream
Tssr9305	transcription start site region 9305	952 bp upstream
Tssr9306	transcription start site region 9306	964 bp upstream
Tssr9307	transcription start site region 9307	968 bp upstream
Tssr9308	transcription start site region 9308	1001 bp upstream
Tssr9309	transcription start site region 9309	1015 bp upstream
Tssr9310	transcription start site region 9310	1046 bp upstream
Tssr9311	transcription start site region 9311	1058 bp upstream
Tssr9312	transcription start site region 9312	1083 bp upstream
Tssr9313	transcription start site region 9313	1103 bp upstream
Tssr9314	transcription start site region 9314	1114 bp upstream
Tssr9315	transcription start site region 9315	1208 bp upstream
Tssr9316	transcription start site region 9316	1391 bp upstream
Tssr9317	transcription start site region 9317	1668 bp upstream