rs33667746 SNP Detail

Summary

• ID
  rs33667746
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149981845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CATGATTAGC TTAACAAGAA CCAAGGAAAA ATGTATGAAT ATGTGAGTGT
  Y
  GTTACAAGAT GAAAAATGCT GCAGGTATCA ACACTGTTGG TTACAACTGT           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49513588	NES12839552	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T		C	T	T	T		T
ss320045548	CHEV_1_151953224	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33667746					SNP	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513588	NES12839552	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149981845 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	1445 bp distal
Rr24983	regulatory region 24983	1549 bp distal
Tssr9256	transcription start site region 9256	1807 bp downstream
Tssr9257	transcription start site region 9257	1773 bp downstream
Tssr9258	transcription start site region 9258	1757 bp downstream
Tssr9259	transcription start site region 9259	1700 bp downstream
Tssr9260	transcription start site region 9260	1648 bp downstream
Tssr9261	transcription start site region 9261	1629 bp downstream
Tssr9262	transcription start site region 9262	1608 bp downstream
Tssr9263	transcription start site region 9263	1596 bp downstream
Tssr9264	transcription start site region 9264	1547 bp downstream
Tssr9265	transcription start site region 9265	1520 bp downstream
Tssr9266	transcription start site region 9266	1431 bp downstream
Tssr9267	transcription start site region 9267	1096 bp downstream
Tssr9268	transcription start site region 9268	1026 bp downstream
Tssr9269	transcription start site region 9269	689 bp downstream
Tssr9270	transcription start site region 9270	658 bp downstream
Tssr9271	transcription start site region 9271	635 bp downstream
Tssr9272	transcription start site region 9272	604 bp downstream
Tssr9273	transcription start site region 9273	560 bp downstream
Tssr9274	transcription start site region 9274	540 bp downstream
Tssr9275	transcription start site region 9275	508 bp downstream
Tssr9276	transcription start site region 9276	494 bp downstream
Tssr9277	transcription start site region 9277	438 bp downstream
Tssr9278	transcription start site region 9278	417 bp downstream
Tssr9279	transcription start site region 9279	399 bp downstream
Tssr9280	transcription start site region 9280	299 bp downstream
Tssr9281	transcription start site region 9281	279 bp downstream
Tssr9282	transcription start site region 9282	245 bp downstream
Tssr9283	transcription start site region 9283	230 bp downstream
Tssr9284	transcription start site region 9284	218 bp downstream
Tssr9285	transcription start site region 9285	204 bp downstream
Tssr9286	transcription start site region 9286	125 bp downstream
Tssr9287	transcription start site region 9287	382 bp upstream
Tssr9288	transcription start site region 9288	498 bp upstream
Tssr9289	transcription start site region 9289	515 bp upstream
Tssr9290	transcription start site region 9290	671 bp upstream
Tssr9291	transcription start site region 9291	717 bp upstream
Tssr9292	transcription start site region 9292	836 bp upstream
Tssr9293	transcription start site region 9293	865 bp upstream
Tssr9294	transcription start site region 9294	885 bp upstream
Tssr9295	transcription start site region 9295	901 bp upstream
Tssr9296	transcription start site region 9296	923 bp upstream
Tssr9297	transcription start site region 9297	932 bp upstream
Tssr9298	transcription start site region 9298	958 bp upstream
Tssr9299	transcription start site region 9299	980 bp upstream
Tssr9300	transcription start site region 9300	997 bp upstream
Tssr9301	transcription start site region 9301	1131 bp upstream
Tssr9302	transcription start site region 9302	1161 bp upstream
Tssr9303	transcription start site region 9303	1223 bp upstream
Tssr9304	transcription start site region 9304	1247 bp upstream
Tssr9305	transcription start site region 9305	1265 bp upstream
Tssr9306	transcription start site region 9306	1277 bp upstream
Tssr9307	transcription start site region 9307	1281 bp upstream
Tssr9308	transcription start site region 9308	1314 bp upstream
Tssr9309	transcription start site region 9309	1328 bp upstream
Tssr9310	transcription start site region 9310	1359 bp upstream
Tssr9311	transcription start site region 9311	1371 bp upstream
Tssr9312	transcription start site region 9312	1396 bp upstream
Tssr9313	transcription start site region 9313	1416 bp upstream
Tssr9314	transcription start site region 9314	1427 bp upstream
Tssr9315	transcription start site region 9315	1521 bp upstream
Tssr9316	transcription start site region 9316	1704 bp upstream
Tssr9317	transcription start site region 9317	1981 bp upstream