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rs33667747 SNP Detail
Summary
  • ID
    rs33667747
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr1:149981602 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
               TATTTATTTA TGTGAAGAAT TTAATTTAAT TATTTAATAT TTATACTGAA
K
TTTTTTTCAT GTAACATCTT CCATAACAGA AGGCAATGTT CTTGAACAAT           

K = G/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
ss49513589 NES12839551 PERLEGEN MM_PANEL2 f SNP T T T T T T T T T G T T T T
ss320045547 CHEV_1_151952981 CHEVERUD SCREENING_POP f SNP T G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs33667747 SNP T T T T T T T T T T G T T T G T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss49513589 NES12839551 PERLEGEN MM_PANEL f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:149981602 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Ptgs2 prostaglandin-endoperoxide synthase 2 within coordinates
Rr12935 regulatory region 12935 1202 bp distal
Rr24983 regulatory region 24983 1306 bp distal
Tssr9250 transcription start site region 9250 1948 bp downstream
Tssr9251 transcription start site region 9251 1896 bp downstream
Tssr9252 transcription start site region 9252 1861 bp downstream
Tssr9253 transcription start site region 9253 1836 bp downstream
Tssr9254 transcription start site region 9254 1820 bp downstream
Tssr9255 transcription start site region 9255 1769 bp downstream
Tssr9256 transcription start site region 9256 1564 bp downstream
Tssr9257 transcription start site region 9257 1530 bp downstream
Tssr9258 transcription start site region 9258 1514 bp downstream
Tssr9259 transcription start site region 9259 1457 bp downstream
Tssr9260 transcription start site region 9260 1405 bp downstream
Tssr9261 transcription start site region 9261 1386 bp downstream
Tssr9262 transcription start site region 9262 1365 bp downstream
Tssr9263 transcription start site region 9263 1353 bp downstream
Tssr9264 transcription start site region 9264 1304 bp downstream
Tssr9265 transcription start site region 9265 1277 bp downstream
Tssr9266 transcription start site region 9266 1188 bp downstream
Tssr9267 transcription start site region 9267 853 bp downstream
Tssr9268 transcription start site region 9268 783 bp downstream
Tssr9269 transcription start site region 9269 446 bp downstream
Tssr9270 transcription start site region 9270 415 bp downstream
Tssr9271 transcription start site region 9271 392 bp downstream
Tssr9272 transcription start site region 9272 361 bp downstream
Tssr9273 transcription start site region 9273 317 bp downstream
Tssr9274 transcription start site region 9274 297 bp downstream
Tssr9275 transcription start site region 9275 265 bp downstream
Tssr9276 transcription start site region 9276 251 bp downstream
Tssr9277 transcription start site region 9277 195 bp downstream
Tssr9278 transcription start site region 9278 174 bp downstream
Tssr9279 transcription start site region 9279 156 bp downstream
Tssr9280 transcription start site region 9280 56 bp downstream
Tssr9281 transcription start site region 9281 36 bp downstream
Tssr9282 transcription start site region 9282 2 bp downstream
Tssr9283 transcription start site region 9283 3 bp upstream
Tssr9284 transcription start site region 9284 18 bp upstream
Tssr9285 transcription start site region 9285 28 bp upstream
Tssr9286 transcription start site region 9286 112 bp upstream
Tssr9287 transcription start site region 9287 625 bp upstream
Tssr9288 transcription start site region 9288 741 bp upstream
Tssr9289 transcription start site region 9289 758 bp upstream
Tssr9290 transcription start site region 9290 914 bp upstream
Tssr9291 transcription start site region 9291 960 bp upstream
Tssr9292 transcription start site region 9292 1079 bp upstream
Tssr9293 transcription start site region 9293 1108 bp upstream
Tssr9294 transcription start site region 9294 1128 bp upstream
Tssr9295 transcription start site region 9295 1144 bp upstream
Tssr9296 transcription start site region 9296 1166 bp upstream
Tssr9297 transcription start site region 9297 1175 bp upstream
Tssr9298 transcription start site region 9298 1201 bp upstream
Tssr9299 transcription start site region 9299 1223 bp upstream
Tssr9300 transcription start site region 9300 1240 bp upstream
Tssr9301 transcription start site region 9301 1374 bp upstream
Tssr9302 transcription start site region 9302 1404 bp upstream
Tssr9303 transcription start site region 9303 1466 bp upstream
Tssr9304 transcription start site region 9304 1490 bp upstream
Tssr9305 transcription start site region 9305 1508 bp upstream
Tssr9306 transcription start site region 9306 1520 bp upstream
Tssr9307 transcription start site region 9307 1524 bp upstream
Tssr9308 transcription start site region 9308 1557 bp upstream
Tssr9309 transcription start site region 9309 1571 bp upstream
Tssr9310 transcription start site region 9310 1602 bp upstream
Tssr9311 transcription start site region 9311 1614 bp upstream
Tssr9312 transcription start site region 9312 1639 bp upstream
Tssr9313 transcription start site region 9313 1659 bp upstream
Tssr9314 transcription start site region 9314 1670 bp upstream
Tssr9315 transcription start site region 9315 1764 bp upstream
Tssr9316 transcription start site region 9316 1947 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory