rs33667748 SNP Detail

Summary

• ID
  rs33667748
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149981111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ttcttcttc ttctAGAAAT AGAAAAGGAC
  CGAGTTTACT GAGAAAGAGG AGTGGGAATG GGGTCAGCTA GTGAGCGGGG GAAAGCCTAT
  GCTCAACAGC CAGGACAATT GTCACCCGTT CCCAGTTTGA TGTTCCTGTA TCTCTATCTT
  Y
  GGTACCTTCC AGGAGAGAAG GAAATGGCTG CAGAATTGAA AGCCCTCTAC AGTGACATCG
  ATGTCATGGA ACTGTACCCT GCCCTGCTGG TGGAAAAACC TCGTCCAGAT GCTATCTTTG
  GGGAGACCAT GGTAGAGCTT GGAGCACCAT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49513592	NES12839548	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T	T	T		C	T	T	T		T
ss320045543	CHEV_1_151952490	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33667748					SNP	T	T	T	T	C	T	C	T	T	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513592	NES12839548	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149981111 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	711 bp distal
Rr24983	regulatory region 24983	815 bp distal
Tssr9248	transcription start site region 9248	1672 bp downstream
Tssr9249	transcription start site region 9249	1658 bp downstream
Tssr9250	transcription start site region 9250	1457 bp downstream
Tssr9251	transcription start site region 9251	1405 bp downstream
Tssr9252	transcription start site region 9252	1370 bp downstream
Tssr9253	transcription start site region 9253	1345 bp downstream
Tssr9254	transcription start site region 9254	1329 bp downstream
Tssr9255	transcription start site region 9255	1278 bp downstream
Tssr9256	transcription start site region 9256	1073 bp downstream
Tssr9257	transcription start site region 9257	1039 bp downstream
Tssr9258	transcription start site region 9258	1023 bp downstream
Tssr9259	transcription start site region 9259	966 bp downstream
Tssr9260	transcription start site region 9260	914 bp downstream
Tssr9261	transcription start site region 9261	895 bp downstream
Tssr9262	transcription start site region 9262	874 bp downstream
Tssr9263	transcription start site region 9263	862 bp downstream
Tssr9264	transcription start site region 9264	813 bp downstream
Tssr9265	transcription start site region 9265	786 bp downstream
Tssr9266	transcription start site region 9266	697 bp downstream
Tssr9267	transcription start site region 9267	362 bp downstream
Tssr9268	transcription start site region 9268	292 bp downstream
Tssr9269	transcription start site region 9269	24 bp upstream
Tssr9270	transcription start site region 9270	64 bp upstream
Tssr9271	transcription start site region 9271	88 bp upstream
Tssr9272	transcription start site region 9272	118 bp upstream
Tssr9273	transcription start site region 9273	170 bp upstream
Tssr9274	transcription start site region 9274	188 bp upstream
Tssr9275	transcription start site region 9275	215 bp upstream
Tssr9276	transcription start site region 9276	230 bp upstream
Tssr9277	transcription start site region 9277	280 bp upstream
Tssr9278	transcription start site region 9278	301 bp upstream
Tssr9279	transcription start site region 9279	322 bp upstream
Tssr9280	transcription start site region 9280	339 bp upstream
Tssr9281	transcription start site region 9281	445 bp upstream
Tssr9282	transcription start site region 9282	480 bp upstream
Tssr9283	transcription start site region 9283	494 bp upstream
Tssr9284	transcription start site region 9284	509 bp upstream
Tssr9285	transcription start site region 9285	519 bp upstream
Tssr9286	transcription start site region 9286	603 bp upstream
Tssr9287	transcription start site region 9287	1116 bp upstream
Tssr9288	transcription start site region 9288	1232 bp upstream
Tssr9289	transcription start site region 9289	1249 bp upstream
Tssr9290	transcription start site region 9290	1405 bp upstream
Tssr9291	transcription start site region 9291	1451 bp upstream
Tssr9292	transcription start site region 9292	1570 bp upstream
Tssr9293	transcription start site region 9293	1599 bp upstream
Tssr9294	transcription start site region 9294	1619 bp upstream
Tssr9295	transcription start site region 9295	1635 bp upstream
Tssr9296	transcription start site region 9296	1657 bp upstream
Tssr9297	transcription start site region 9297	1666 bp upstream
Tssr9298	transcription start site region 9298	1692 bp upstream
Tssr9299	transcription start site region 9299	1714 bp upstream
Tssr9300	transcription start site region 9300	1731 bp upstream
Tssr9301	transcription start site region 9301	1865 bp upstream
Tssr9302	transcription start site region 9302	1895 bp upstream
Tssr9303	transcription start site region 9303	1957 bp upstream
Tssr9304	transcription start site region 9304	1981 bp upstream
Tssr9305	transcription start site region 9305	1999 bp upstream