rs33667749 SNP Detail

Summary

• ID
  rs33667749
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149981078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    Atcttcctc ttcctcctcc tcctcctcct
  tttcttcttc ttcttctAGA AATAGAAAAG GACCGAGTTT ACTGAGAAAG AGGAGTGGGA
  ATGGGGTCAG CTAGTGAGCG GGGGAAAGCC TATGCTCAAC AGCCAGGACA ATTGTCACCC
  R
  TTCCCAGTTT GATGTTCCTG TATCTCTATC TTTGGTACCT TCCAGGAGAG AAGGAAATGG
  CTGCAGAATT GAAAGCCCTC TACAGTGACA TCGATGTCAT GGAACTGTAC CCTGCCCTGC
  TGGTGGAAAA ACCTCGTCCA GATGCTATCT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49513593	NES12839547	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G		A	G	G	G		G
ss320045542	CHEV_1_151952457	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33667749					SNP	G	G	G	G	A	G	G	G	G	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513593	NES12839547	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149981078 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	678 bp distal
Rr24983	regulatory region 24983	782 bp distal
Tssr9248	transcription start site region 9248	1639 bp downstream
Tssr9249	transcription start site region 9249	1625 bp downstream
Tssr9250	transcription start site region 9250	1424 bp downstream
Tssr9251	transcription start site region 9251	1372 bp downstream
Tssr9252	transcription start site region 9252	1337 bp downstream
Tssr9253	transcription start site region 9253	1312 bp downstream
Tssr9254	transcription start site region 9254	1296 bp downstream
Tssr9255	transcription start site region 9255	1245 bp downstream
Tssr9256	transcription start site region 9256	1040 bp downstream
Tssr9257	transcription start site region 9257	1006 bp downstream
Tssr9258	transcription start site region 9258	990 bp downstream
Tssr9259	transcription start site region 9259	933 bp downstream
Tssr9260	transcription start site region 9260	881 bp downstream
Tssr9261	transcription start site region 9261	862 bp downstream
Tssr9262	transcription start site region 9262	841 bp downstream
Tssr9263	transcription start site region 9263	829 bp downstream
Tssr9264	transcription start site region 9264	780 bp downstream
Tssr9265	transcription start site region 9265	753 bp downstream
Tssr9266	transcription start site region 9266	664 bp downstream
Tssr9267	transcription start site region 9267	329 bp downstream
Tssr9268	transcription start site region 9268	259 bp downstream
Tssr9269	transcription start site region 9269	57 bp upstream
Tssr9270	transcription start site region 9270	97 bp upstream
Tssr9271	transcription start site region 9271	121 bp upstream
Tssr9272	transcription start site region 9272	151 bp upstream
Tssr9273	transcription start site region 9273	203 bp upstream
Tssr9274	transcription start site region 9274	221 bp upstream
Tssr9275	transcription start site region 9275	248 bp upstream
Tssr9276	transcription start site region 9276	263 bp upstream
Tssr9277	transcription start site region 9277	313 bp upstream
Tssr9278	transcription start site region 9278	334 bp upstream
Tssr9279	transcription start site region 9279	355 bp upstream
Tssr9280	transcription start site region 9280	372 bp upstream
Tssr9281	transcription start site region 9281	478 bp upstream
Tssr9282	transcription start site region 9282	513 bp upstream
Tssr9283	transcription start site region 9283	527 bp upstream
Tssr9284	transcription start site region 9284	542 bp upstream
Tssr9285	transcription start site region 9285	552 bp upstream
Tssr9286	transcription start site region 9286	636 bp upstream
Tssr9287	transcription start site region 9287	1149 bp upstream
Tssr9288	transcription start site region 9288	1265 bp upstream
Tssr9289	transcription start site region 9289	1282 bp upstream
Tssr9290	transcription start site region 9290	1438 bp upstream
Tssr9291	transcription start site region 9291	1484 bp upstream
Tssr9292	transcription start site region 9292	1603 bp upstream
Tssr9293	transcription start site region 9293	1632 bp upstream
Tssr9294	transcription start site region 9294	1652 bp upstream
Tssr9295	transcription start site region 9295	1668 bp upstream
Tssr9296	transcription start site region 9296	1690 bp upstream
Tssr9297	transcription start site region 9297	1699 bp upstream
Tssr9298	transcription start site region 9298	1725 bp upstream
Tssr9299	transcription start site region 9299	1747 bp upstream
Tssr9300	transcription start site region 9300	1764 bp upstream
Tssr9301	transcription start site region 9301	1898 bp upstream
Tssr9302	transcription start site region 9302	1928 bp upstream
Tssr9303	transcription start site region 9303	1990 bp upstream