rs33667750 SNP Detail

Summary

• ID
  rs33667750
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149981016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGGGATAA ACTATCTTCC TCTTCCTCCT CCTCCTCCTC
  CTTTTCTTCT TCTTCTTCTA GAAATAGAAA AGGACCGAGT TTACTGAGAA AGAGGAGTGG
  R
  AATGGGGTCA GCTAGTGAGC GGGGGAAAGC CTATGCTCAA CAGCCAGGAC AATTGTCACC
  CGTTCCCAGT TTGATGTTCC TGTATCTCTA TCTTTGGTAC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49513594	NES12924109	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33667750					SNP	G	G	G	G	A	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513594	NES12924109	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149981016 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	616 bp distal
Rr24983	regulatory region 24983	720 bp distal
Tssr9248	transcription start site region 9248	1577 bp downstream
Tssr9249	transcription start site region 9249	1563 bp downstream
Tssr9250	transcription start site region 9250	1362 bp downstream
Tssr9251	transcription start site region 9251	1310 bp downstream
Tssr9252	transcription start site region 9252	1275 bp downstream
Tssr9253	transcription start site region 9253	1250 bp downstream
Tssr9254	transcription start site region 9254	1234 bp downstream
Tssr9255	transcription start site region 9255	1183 bp downstream
Tssr9256	transcription start site region 9256	978 bp downstream
Tssr9257	transcription start site region 9257	944 bp downstream
Tssr9258	transcription start site region 9258	928 bp downstream
Tssr9259	transcription start site region 9259	871 bp downstream
Tssr9260	transcription start site region 9260	819 bp downstream
Tssr9261	transcription start site region 9261	800 bp downstream
Tssr9262	transcription start site region 9262	779 bp downstream
Tssr9263	transcription start site region 9263	767 bp downstream
Tssr9264	transcription start site region 9264	718 bp downstream
Tssr9265	transcription start site region 9265	691 bp downstream
Tssr9266	transcription start site region 9266	602 bp downstream
Tssr9267	transcription start site region 9267	267 bp downstream
Tssr9268	transcription start site region 9268	197 bp downstream
Tssr9269	transcription start site region 9269	119 bp upstream
Tssr9270	transcription start site region 9270	159 bp upstream
Tssr9271	transcription start site region 9271	183 bp upstream
Tssr9272	transcription start site region 9272	213 bp upstream
Tssr9273	transcription start site region 9273	265 bp upstream
Tssr9274	transcription start site region 9274	283 bp upstream
Tssr9275	transcription start site region 9275	310 bp upstream
Tssr9276	transcription start site region 9276	325 bp upstream
Tssr9277	transcription start site region 9277	375 bp upstream
Tssr9278	transcription start site region 9278	396 bp upstream
Tssr9279	transcription start site region 9279	417 bp upstream
Tssr9280	transcription start site region 9280	434 bp upstream
Tssr9281	transcription start site region 9281	540 bp upstream
Tssr9282	transcription start site region 9282	575 bp upstream
Tssr9283	transcription start site region 9283	589 bp upstream
Tssr9284	transcription start site region 9284	604 bp upstream
Tssr9285	transcription start site region 9285	614 bp upstream
Tssr9286	transcription start site region 9286	698 bp upstream
Tssr9287	transcription start site region 9287	1211 bp upstream
Tssr9288	transcription start site region 9288	1327 bp upstream
Tssr9289	transcription start site region 9289	1344 bp upstream
Tssr9290	transcription start site region 9290	1500 bp upstream
Tssr9291	transcription start site region 9291	1546 bp upstream
Tssr9292	transcription start site region 9292	1665 bp upstream
Tssr9293	transcription start site region 9293	1694 bp upstream
Tssr9294	transcription start site region 9294	1714 bp upstream
Tssr9295	transcription start site region 9295	1730 bp upstream
Tssr9296	transcription start site region 9296	1752 bp upstream
Tssr9297	transcription start site region 9297	1761 bp upstream
Tssr9298	transcription start site region 9298	1787 bp upstream
Tssr9299	transcription start site region 9299	1809 bp upstream
Tssr9300	transcription start site region 9300	1826 bp upstream
Tssr9301	transcription start site region 9301	1960 bp upstream
Tssr9302	transcription start site region 9302	1990 bp upstream