rs33667751 SNP Detail

Summary

• ID
  rs33667751
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149980417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGGAGTA CAGCTTCAAA
  CAGTTTCTCT ACAACAACTC CATCCTCCTG GAACATGGAC TCACTCAGTT TGTTGAGTCA
  TTCACCAGAC AGATTGCTGG CCGGGTAAGC ATTGTTCCTG AAAAGCAAGA ACCAGCTGGT
  CAGTAGCTTT AGGATTTTTG TCATAGAGAT AGGTTTTTTT TTTTCTTTTA CTTTTCTACT
  R
  GTTCTTGTAA CATGACACTT ACAAGGTTTA GGAAGGGTTT TAGGTTCATC TAAAATTATC
  CAGCAAATAA TGACACCTGT CTATCTTAAA ACCAATATTT TTAAAAGATT TCAGTCATCT
  TATATATTAG AGAAGTTAAT ATTCAGACTT GTTTATCAGC TTATTTTTTT ATAATCACAA
  AAATCATGTT CCTTATAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49513598	NES12839543	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33667751					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513598	NES12839543	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149980417 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	17 bp distal
Rr24983	regulatory region 24983	121 bp distal
Tssr242	transcription start site region 242	1861 bp downstream
Tssr9234	transcription start site region 9234	1992 bp downstream
Tssr9235	transcription start site region 9235	1961 bp downstream
Tssr9236	transcription start site region 9236	1936 bp downstream
Tssr9237	transcription start site region 9237	1904 bp downstream
Tssr9238	transcription start site region 9238	1873 bp downstream
Tssr9239	transcription start site region 9239	1839 bp downstream
Tssr9240	transcription start site region 9240	1825 bp downstream
Tssr9241	transcription start site region 9241	1795 bp downstream
Tssr9242	transcription start site region 9242	1779 bp downstream
Tssr9243	transcription start site region 9243	1652 bp downstream
Tssr9244	transcription start site region 9244	1601 bp downstream
Tssr9245	transcription start site region 9245	1565 bp downstream
Tssr9246	transcription start site region 9246	1546 bp downstream
Tssr9247	transcription start site region 9247	1411 bp downstream
Tssr9248	transcription start site region 9248	978 bp downstream
Tssr9249	transcription start site region 9249	964 bp downstream
Tssr9250	transcription start site region 9250	763 bp downstream
Tssr9251	transcription start site region 9251	711 bp downstream
Tssr9252	transcription start site region 9252	676 bp downstream
Tssr9253	transcription start site region 9253	651 bp downstream
Tssr9254	transcription start site region 9254	635 bp downstream
Tssr9255	transcription start site region 9255	584 bp downstream
Tssr9256	transcription start site region 9256	379 bp downstream
Tssr9257	transcription start site region 9257	345 bp downstream
Tssr9258	transcription start site region 9258	329 bp downstream
Tssr9259	transcription start site region 9259	272 bp downstream
Tssr9260	transcription start site region 9260	220 bp downstream
Tssr9261	transcription start site region 9261	201 bp downstream
Tssr9262	transcription start site region 9262	180 bp downstream
Tssr9263	transcription start site region 9263	168 bp downstream
Tssr9264	transcription start site region 9264	119 bp downstream
Tssr9265	transcription start site region 9265	92 bp downstream
Tssr9266	transcription start site region 9266	3 bp downstream
Tssr9267	transcription start site region 9267	279 bp upstream
Tssr9268	transcription start site region 9268	335 bp upstream
Tssr9269	transcription start site region 9269	718 bp upstream
Tssr9270	transcription start site region 9270	758 bp upstream
Tssr9271	transcription start site region 9271	782 bp upstream
Tssr9272	transcription start site region 9272	812 bp upstream
Tssr9273	transcription start site region 9273	864 bp upstream
Tssr9274	transcription start site region 9274	882 bp upstream
Tssr9275	transcription start site region 9275	909 bp upstream
Tssr9276	transcription start site region 9276	924 bp upstream
Tssr9277	transcription start site region 9277	974 bp upstream
Tssr9278	transcription start site region 9278	995 bp upstream
Tssr9279	transcription start site region 9279	1016 bp upstream
Tssr9280	transcription start site region 9280	1033 bp upstream
Tssr9281	transcription start site region 9281	1139 bp upstream
Tssr9282	transcription start site region 9282	1174 bp upstream
Tssr9283	transcription start site region 9283	1188 bp upstream
Tssr9284	transcription start site region 9284	1203 bp upstream
Tssr9285	transcription start site region 9285	1213 bp upstream
Tssr9286	transcription start site region 9286	1297 bp upstream
Tssr9287	transcription start site region 9287	1810 bp upstream
Tssr9288	transcription start site region 9288	1926 bp upstream
Tssr9289	transcription start site region 9289	1943 bp upstream