rs33667752 SNP Detail

Summary

• ID
  rs33667752
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:149980330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCCAGTA TCAGAACCGC
  ATTGCCTCTG AATTCAACAC ACTCTATCAC TGGCACCCCC TGCTGCCCGA CACCTTCAAC
  ATTGAAGACC AGGAGTACAG CTTCAAACAG TTTCTCTACA ACAACTCCAT CCTCCTGGAA
  CATGGACTCA CTCAGTTTGT TGAGTCATTC ACCAGACAGA TTGCTGGCCG GGTAAGCATT
  R
  TTCCTGAAAA GCAAGAACCA GCTGGTCAGT AGCTTTAGGA TTTTTGTCAT AGAGATAGGT
  TTTTTTTTTT CTTTTACTTT TCTACTGGTT CTTGTAACAT GACACTTACA AGGTTTAGGA
  AGGGTTTTAG GTTCATCTAA AATTATCCAG CAAATAATGA CACCTGTCTA TCTTAAAACC
  AATATTTTTA AAAGATTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49513599	NES12839542	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33667752					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513599	NES12839542	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149980330 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	Intron
Rr420123	regulatory region 420123	130 bp distal
Tssr242	transcription start site region 242	1774 bp downstream
Tssr9233	transcription start site region 9233	1934 bp downstream
Tssr9234	transcription start site region 9234	1905 bp downstream
Tssr9235	transcription start site region 9235	1874 bp downstream
Tssr9236	transcription start site region 9236	1849 bp downstream
Tssr9237	transcription start site region 9237	1817 bp downstream
Tssr9238	transcription start site region 9238	1786 bp downstream
Tssr9239	transcription start site region 9239	1752 bp downstream
Tssr9240	transcription start site region 9240	1738 bp downstream
Tssr9241	transcription start site region 9241	1708 bp downstream
Tssr9242	transcription start site region 9242	1692 bp downstream
Tssr9243	transcription start site region 9243	1565 bp downstream
Tssr9244	transcription start site region 9244	1514 bp downstream
Tssr9245	transcription start site region 9245	1478 bp downstream
Tssr9246	transcription start site region 9246	1459 bp downstream
Tssr9247	transcription start site region 9247	1324 bp downstream
Tssr9248	transcription start site region 9248	891 bp downstream
Tssr9249	transcription start site region 9249	877 bp downstream
Tssr9250	transcription start site region 9250	676 bp downstream
Tssr9251	transcription start site region 9251	624 bp downstream
Tssr9252	transcription start site region 9252	589 bp downstream
Tssr9253	transcription start site region 9253	564 bp downstream
Tssr9254	transcription start site region 9254	548 bp downstream
Tssr9255	transcription start site region 9255	497 bp downstream
Tssr9256	transcription start site region 9256	292 bp downstream
Tssr9257	transcription start site region 9257	258 bp downstream
Tssr9258	transcription start site region 9258	242 bp downstream
Tssr9259	transcription start site region 9259	185 bp downstream
Tssr9260	transcription start site region 9260	133 bp downstream
Tssr9261	transcription start site region 9261	114 bp downstream
Tssr9262	transcription start site region 9262	93 bp downstream
Tssr9263	transcription start site region 9263	81 bp downstream
Tssr9264	transcription start site region 9264	32 bp downstream
Tssr9265	transcription start site region 9265	5 bp downstream
Tssr9266	transcription start site region 9266	75 bp upstream
Tssr9267	transcription start site region 9267	366 bp upstream
Tssr9268	transcription start site region 9268	422 bp upstream
Tssr9269	transcription start site region 9269	805 bp upstream
Tssr9270	transcription start site region 9270	845 bp upstream
Tssr9271	transcription start site region 9271	869 bp upstream
Tssr9272	transcription start site region 9272	899 bp upstream
Tssr9273	transcription start site region 9273	951 bp upstream
Tssr9274	transcription start site region 9274	969 bp upstream
Tssr9275	transcription start site region 9275	996 bp upstream
Tssr9276	transcription start site region 9276	1011 bp upstream
Tssr9277	transcription start site region 9277	1061 bp upstream
Tssr9278	transcription start site region 9278	1082 bp upstream
Tssr9279	transcription start site region 9279	1103 bp upstream
Tssr9280	transcription start site region 9280	1120 bp upstream
Tssr9281	transcription start site region 9281	1226 bp upstream
Tssr9282	transcription start site region 9282	1261 bp upstream
Tssr9283	transcription start site region 9283	1275 bp upstream
Tssr9284	transcription start site region 9284	1290 bp upstream
Tssr9285	transcription start site region 9285	1300 bp upstream
Tssr9286	transcription start site region 9286	1384 bp upstream
Tssr9287	transcription start site region 9287	1897 bp upstream